miRNA display CGI


Results 41 - 60 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24103 5' -56.6 NC_005262.1 + 14520 0.69 0.520862
Target:  5'- gCGAUCGGcaacagcauggcaguGcCGUGCAUGCGCUgGAUCg -3'
miRNA:   3'- -GCUAGUC---------------C-GCGCGUACGUGGgCUAGg -5'
24103 5' -56.6 NC_005262.1 + 58080 0.69 0.526023
Target:  5'- aGGUCaAGGUGCGCGacgGCaacaaccGCCUGAUCg -3'
miRNA:   3'- gCUAG-UCCGCGCGUa--CG-------UGGGCUAGg -5'
24103 5' -56.6 NC_005262.1 + 11838 0.69 0.527057
Target:  5'- uCGAgcgCAGGCGCGCGcgagcgGCcuccACCUuGUCCg -3'
miRNA:   3'- -GCUa--GUCCGCGCGUa-----CG----UGGGcUAGG- -5'
24103 5' -56.6 NC_005262.1 + 1081 0.69 0.537443
Target:  5'- cCGAUCAGG-GUGCGUGCgcgauuACCC-AUCg -3'
miRNA:   3'- -GCUAGUCCgCGCGUACG------UGGGcUAGg -5'
24103 5' -56.6 NC_005262.1 + 8952 0.69 0.537443
Target:  5'- uCGcgCGGGCGaCGCAcucCACCC-AUCCg -3'
miRNA:   3'- -GCuaGUCCGC-GCGUac-GUGGGcUAGG- -5'
24103 5' -56.6 NC_005262.1 + 15993 0.68 0.546849
Target:  5'- aGAUC-GGCGUGCAgcgcgGCACCgacgacgagcaggCGAUCg -3'
miRNA:   3'- gCUAGuCCGCGCGUa----CGUGG-------------GCUAGg -5'
24103 5' -56.6 NC_005262.1 + 10230 0.68 0.547898
Target:  5'- cCGGUCA---GCGCGUGCGCgCCGAgcaCCa -3'
miRNA:   3'- -GCUAGUccgCGCGUACGUG-GGCUa--GG- -5'
24103 5' -56.6 NC_005262.1 + 36904 0.68 0.558416
Target:  5'- uGAUCGacaacGGaCGCGCcgGcCACUCGAUCg -3'
miRNA:   3'- gCUAGU-----CC-GCGCGuaC-GUGGGCUAGg -5'
24103 5' -56.6 NC_005262.1 + 4689 0.68 0.558416
Target:  5'- gGAUCGGGC-CGCG-GCAUCCaGUCg -3'
miRNA:   3'- gCUAGUCCGcGCGUaCGUGGGcUAGg -5'
24103 5' -56.6 NC_005262.1 + 50655 0.68 0.568991
Target:  5'- cCGcgCAGcGCGCGCGgcggaccuaauUGUGCCaCGGUUCg -3'
miRNA:   3'- -GCuaGUC-CGCGCGU-----------ACGUGG-GCUAGG- -5'
24103 5' -56.6 NC_005262.1 + 61698 0.68 0.568991
Target:  5'- aCGAUCAgGGCGCGCcgGguuCGCUCGGcgcgcUCUg -3'
miRNA:   3'- -GCUAGU-CCGCGCGuaC---GUGGGCU-----AGG- -5'
24103 5' -56.6 NC_005262.1 + 10784 0.68 0.568991
Target:  5'- ---cCGGGCGCGCGguacUGCugCgCGAgcugCCg -3'
miRNA:   3'- gcuaGUCCGCGCGU----ACGugG-GCUa---GG- -5'
24103 5' -56.6 NC_005262.1 + 16867 0.68 0.579615
Target:  5'- uGAUgCAGGCGCcCGgccGCGCgCCGggCCg -3'
miRNA:   3'- gCUA-GUCCGCGcGUa--CGUG-GGCuaGG- -5'
24103 5' -56.6 NC_005262.1 + 20833 0.68 0.579615
Target:  5'- -cAUCGcGGgGCGCG-GCACCCGcUCUa -3'
miRNA:   3'- gcUAGU-CCgCGCGUaCGUGGGCuAGG- -5'
24103 5' -56.6 NC_005262.1 + 25874 0.68 0.59028
Target:  5'- aCGAUCgAGGCGaaGCAcgGCAUCaCGAUCg -3'
miRNA:   3'- -GCUAG-UCCGCg-CGUa-CGUGG-GCUAGg -5'
24103 5' -56.6 NC_005262.1 + 49223 0.68 0.600979
Target:  5'- gCGGccUCGgcGGCGCGCAguccGCGCgCGAggUCCg -3'
miRNA:   3'- -GCU--AGU--CCGCGCGUa---CGUGgGCU--AGG- -5'
24103 5' -56.6 NC_005262.1 + 3024 0.68 0.600979
Target:  5'- uGAUCcGGCGgaagccguugaGCcgGCGCCCGGUUa -3'
miRNA:   3'- gCUAGuCCGCg----------CGuaCGUGGGCUAGg -5'
24103 5' -56.6 NC_005262.1 + 46922 0.67 0.611703
Target:  5'- gCGGcCcGGCGCGCGgccggGCGCCUGcAUCa -3'
miRNA:   3'- -GCUaGuCCGCGCGUa----CGUGGGC-UAGg -5'
24103 5' -56.6 NC_005262.1 + 49819 0.67 0.611703
Target:  5'- cCGAUCGGccgcgcgauggaGCGCGCGaaUG-GCCCGGUgCCg -3'
miRNA:   3'- -GCUAGUC------------CGCGCGU--ACgUGGGCUA-GG- -5'
24103 5' -56.6 NC_005262.1 + 13533 0.67 0.622444
Target:  5'- gGcgCGGGCGCGCccucguugcgGCGgUCGAUCUc -3'
miRNA:   3'- gCuaGUCCGCGCGua--------CGUgGGCUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.