miRNA display CGI


Results 41 - 60 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24103 5' -56.6 NC_005262.1 + 20833 0.68 0.579615
Target:  5'- -cAUCGcGGgGCGCG-GCACCCGcUCUa -3'
miRNA:   3'- gcUAGU-CCgCGCGUaCGUGGGCuAGG- -5'
24103 5' -56.6 NC_005262.1 + 22608 0.66 0.697334
Target:  5'- gCGGUCgccGGGCGCGCAcGCgaucgcggcgguGCCC--UCCu -3'
miRNA:   3'- -GCUAG---UCCGCGCGUaCG------------UGGGcuAGG- -5'
24103 5' -56.6 NC_005262.1 + 24727 0.66 0.71834
Target:  5'- uGAUCGcgcuGGCGCGCGcgaucggcgUGCGgCCGAa-- -3'
miRNA:   3'- gCUAGU----CCGCGCGU---------ACGUgGGCUagg -5'
24103 5' -56.6 NC_005262.1 + 25874 0.68 0.59028
Target:  5'- aCGAUCgAGGCGaaGCAcgGCAUCaCGAUCg -3'
miRNA:   3'- -GCUAG-UCCGCg-CGUa-CGUGG-GCUAGg -5'
24103 5' -56.6 NC_005262.1 + 26174 0.66 0.71834
Target:  5'- aCGAgu-GGCGCGCG---AUCCGAUUCa -3'
miRNA:   3'- -GCUaguCCGCGCGUacgUGGGCUAGG- -5'
24103 5' -56.6 NC_005262.1 + 26883 0.69 0.50652
Target:  5'- aCGAUCGagugggccGGCGCGUccGUugUCGAUCa -3'
miRNA:   3'- -GCUAGU--------CCGCGCGuaCGugGGCUAGg -5'
24103 5' -56.6 NC_005262.1 + 28823 0.66 0.707873
Target:  5'- --cUCGaGCuCGCGUcGCGCUCGAUCCa -3'
miRNA:   3'- gcuAGUcCGcGCGUA-CGUGGGCUAGG- -5'
24103 5' -56.6 NC_005262.1 + 29901 0.66 0.665398
Target:  5'- cCGAUCGGGC-CGCcgGCcgacGCaCGAUCg -3'
miRNA:   3'- -GCUAGUCCGcGCGuaCG----UGgGCUAGg -5'
24103 5' -56.6 NC_005262.1 + 30500 0.66 0.707873
Target:  5'- aCGGcuUC-GGCGCccgGCGUGCGCgCGAUgCg -3'
miRNA:   3'- -GCU--AGuCCGCG---CGUACGUGgGCUAgG- -5'
24103 5' -56.6 NC_005262.1 + 31739 0.67 0.643942
Target:  5'- gCGGUCGcauGuCGCGCAaGCGCaCGGUCCa -3'
miRNA:   3'- -GCUAGUc--C-GCGCGUaCGUGgGCUAGG- -5'
24103 5' -56.6 NC_005262.1 + 32301 0.66 0.71834
Target:  5'- gCGAacgUCgAGGCaGCGCGUGCGCUguucaUGggCCg -3'
miRNA:   3'- -GCU---AG-UCCG-CGCGUACGUGG-----GCuaGG- -5'
24103 5' -56.6 NC_005262.1 + 32518 0.66 0.676086
Target:  5'- gCGAUCuuGGC-CGCGgacgacugcgGCugCCGAUCg -3'
miRNA:   3'- -GCUAGu-CCGcGCGUa---------CGugGGCUAGg -5'
24103 5' -56.6 NC_005262.1 + 32561 0.66 0.71834
Target:  5'- cCGAcUUGGGCGCGUcgaucgacagGCGCgCGAUCUu -3'
miRNA:   3'- -GCU-AGUCCGCGCGua--------CGUGgGCUAGG- -5'
24103 5' -56.6 NC_005262.1 + 32991 0.66 0.664327
Target:  5'- aCGGUCGcGGCGCagacgcagGCAgccaacgccaagcUGCGCCUGAUgCu -3'
miRNA:   3'- -GCUAGU-CCGCG--------CGU-------------ACGUGGGCUAgG- -5'
24103 5' -56.6 NC_005262.1 + 33890 0.7 0.44716
Target:  5'- aCGAUCGuGCGUcgGCcgGCgGCCCGAUCg -3'
miRNA:   3'- -GCUAGUcCGCG--CGuaCG-UGGGCUAGg -5'
24103 5' -56.6 NC_005262.1 + 34142 0.66 0.675019
Target:  5'- gCGGgcgCGGGCG-GCAUgccgcucGCugCCGAUgCCg -3'
miRNA:   3'- -GCUa--GUCCGCgCGUA-------CGugGGCUA-GG- -5'
24103 5' -56.6 NC_005262.1 + 34502 0.66 0.715208
Target:  5'- cCGuUCAcGGCGCGgAUGCGCUucacgagcucgucgCGGUUCg -3'
miRNA:   3'- -GCuAGU-CCGCGCgUACGUGG--------------GCUAGG- -5'
24103 5' -56.6 NC_005262.1 + 34566 0.66 0.707873
Target:  5'- aCGAUCcgaacgucguGuGCGCGCcgugcgGCGCCgUGAUCCa -3'
miRNA:   3'- -GCUAGu---------C-CGCGCGua----CGUGG-GCUAGG- -5'
24103 5' -56.6 NC_005262.1 + 34745 0.67 0.633194
Target:  5'- cCGAaCAcGGUGCGCGUcGUGCCgGcgCCg -3'
miRNA:   3'- -GCUaGU-CCGCGCGUA-CGUGGgCuaGG- -5'
24103 5' -56.6 NC_005262.1 + 34878 0.67 0.640718
Target:  5'- -cGUgGGGCGCGCucgcgagcauccucAUGCugCCGAagCa -3'
miRNA:   3'- gcUAgUCCGCGCG--------------UACGugGGCUagG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.