miRNA display CGI


Results 61 - 80 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24103 5' -56.6 NC_005262.1 + 36175 0.66 0.676086
Target:  5'- aGAggAGGCGCGaGUGCAgCUCGAcggCCu -3'
miRNA:   3'- gCUagUCCGCGCgUACGU-GGGCUa--GG- -5'
24103 5' -56.6 NC_005262.1 + 36476 0.66 0.665398
Target:  5'- uCGAgCAGGUGguCGUggaugAUGCugCCGAUCUu -3'
miRNA:   3'- -GCUaGUCCGC--GCG-----UACGugGGCUAGG- -5'
24103 5' -56.6 NC_005262.1 + 36904 0.68 0.558416
Target:  5'- uGAUCGacaacGGaCGCGCcgGcCACUCGAUCg -3'
miRNA:   3'- gCUAGU-----CC-GCGCGuaC-GUGGGCUAGg -5'
24103 5' -56.6 NC_005262.1 + 37104 0.69 0.496379
Target:  5'- cCGAUCGGGCcgGCcacgGCAcUGCACgUUGAUCCa -3'
miRNA:   3'- -GCUAGUCCG--CG----CGU-ACGUG-GGCUAGG- -5'
24103 5' -56.6 NC_005262.1 + 37679 0.66 0.71834
Target:  5'- gGAUCGGGCGUGCA---GCUCG-UCg -3'
miRNA:   3'- gCUAGUCCGCGCGUacgUGGGCuAGg -5'
24103 5' -56.6 NC_005262.1 + 37931 0.76 0.202244
Target:  5'- aCGAUU-GGCGCGCAUGgACCgCGAcgCCa -3'
miRNA:   3'- -GCUAGuCCGCGCGUACgUGG-GCUa-GG- -5'
24103 5' -56.6 NC_005262.1 + 39634 0.66 0.676086
Target:  5'- gGAacgugCAGGCGUGCGccuccUGcCGCCC-AUCCu -3'
miRNA:   3'- gCUa----GUCCGCGCGU-----AC-GUGGGcUAGG- -5'
24103 5' -56.6 NC_005262.1 + 40344 0.7 0.437643
Target:  5'- ---cCAGGcCGCGCAUGCGCCa-GUCg -3'
miRNA:   3'- gcuaGUCC-GCGCGUACGUGGgcUAGg -5'
24103 5' -56.6 NC_005262.1 + 41111 0.82 0.080256
Target:  5'- gCGGUCgAGGCGCGUcUGCGCaCUGGUCCg -3'
miRNA:   3'- -GCUAG-UCCGCGCGuACGUG-GGCUAGG- -5'
24103 5' -56.6 NC_005262.1 + 41161 0.66 0.676086
Target:  5'- ---gCAGcGCGCGCAggaggGCACCgccgCGAUCg -3'
miRNA:   3'- gcuaGUC-CGCGCGUa----CGUGG----GCUAGg -5'
24103 5' -56.6 NC_005262.1 + 44674 0.75 0.230104
Target:  5'- ---cCGGcGaCGCGCccGCGCCCGAUCCg -3'
miRNA:   3'- gcuaGUC-C-GCGCGuaCGUGGGCUAGG- -5'
24103 5' -56.6 NC_005262.1 + 44845 0.74 0.281343
Target:  5'- gGAUCAGGCGaauGCGUGgGCCCGcgaggaCCg -3'
miRNA:   3'- gCUAGUCCGCg--CGUACgUGGGCua----GG- -5'
24103 5' -56.6 NC_005262.1 + 45338 0.66 0.686735
Target:  5'- aGGUCugcaAGGCgGCGCggGCGuCCUGAaCCa -3'
miRNA:   3'- gCUAG----UCCG-CGCGuaCGU-GGGCUaGG- -5'
24103 5' -56.6 NC_005262.1 + 45640 0.78 0.143188
Target:  5'- gCGAUCAGGCGgGCAcGCGcuCCCGGUUg -3'
miRNA:   3'- -GCUAGUCCGCgCGUaCGU--GGGCUAGg -5'
24103 5' -56.6 NC_005262.1 + 46393 0.71 0.418963
Target:  5'- cCGAaCAGGCGCGCcucgucgggcUGgGCCCGcaagGUCCg -3'
miRNA:   3'- -GCUaGUCCGCGCGu---------ACgUGGGC----UAGG- -5'
24103 5' -56.6 NC_005262.1 + 46724 0.66 0.665398
Target:  5'- uCGA-CGGGCGCGCcuaucggcgccGUGCGCgCGAc-- -3'
miRNA:   3'- -GCUaGUCCGCGCG-----------UACGUGgGCUagg -5'
24103 5' -56.6 NC_005262.1 + 46922 0.67 0.611703
Target:  5'- gCGGcCcGGCGCGCGgccggGCGCCUGcAUCa -3'
miRNA:   3'- -GCUaGuCCGCGCGUa----CGUGGGC-UAGg -5'
24103 5' -56.6 NC_005262.1 + 47286 0.66 0.71834
Target:  5'- gGGUCAGccccaGCGCA-GCGCCCaGcgCCu -3'
miRNA:   3'- gCUAGUCcg---CGCGUaCGUGGG-CuaGG- -5'
24103 5' -56.6 NC_005262.1 + 47801 0.7 0.466533
Target:  5'- -cGUCGGuGcCGCGC-UGCACgCCGAUCUc -3'
miRNA:   3'- gcUAGUC-C-GCGCGuACGUG-GGCUAGG- -5'
24103 5' -56.6 NC_005262.1 + 49223 0.68 0.600979
Target:  5'- gCGGccUCGgcGGCGCGCAguccGCGCgCGAggUCCg -3'
miRNA:   3'- -GCU--AGU--CCGCGCGUa---CGUGgGCU--AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.