miRNA display CGI


Results 61 - 80 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24103 5' -56.6 NC_005262.1 + 46724 0.66 0.665398
Target:  5'- uCGA-CGGGCGCGCcuaucggcgccGUGCGCgCGAc-- -3'
miRNA:   3'- -GCUaGUCCGCGCG-----------UACGUGgGCUagg -5'
24103 5' -56.6 NC_005262.1 + 36476 0.66 0.665398
Target:  5'- uCGAgCAGGUGguCGUggaugAUGCugCCGAUCUu -3'
miRNA:   3'- -GCUaGUCCGC--GCG-----UACGugGGCUAGG- -5'
24103 5' -56.6 NC_005262.1 + 19122 0.66 0.665398
Target:  5'- gGAUCGGGCGCGgGcGCGuCgCCGGcgUCUu -3'
miRNA:   3'- gCUAGUCCGCGCgUaCGU-G-GGCU--AGG- -5'
24103 5' -56.6 NC_005262.1 + 18091 0.67 0.655753
Target:  5'- uCGAUCAcggccGGCugccggcccucgauGCGCAcgaagugcggcaccaUGCGCUCGAUCUg -3'
miRNA:   3'- -GCUAGU-----CCG--------------CGCGU---------------ACGUGGGCUAGG- -5'
24103 5' -56.6 NC_005262.1 + 6464 0.67 0.65468
Target:  5'- cCGGgaacGGCGCGCccagacgGUugCCGAUCUg -3'
miRNA:   3'- -GCUagu-CCGCGCGua-----CGugGGCUAGG- -5'
24103 5' -56.6 NC_005262.1 + 13533 0.67 0.622444
Target:  5'- gGcgCGGGCGCGCccucguugcgGCGgUCGAUCUc -3'
miRNA:   3'- gCuaGUCCGCGCGua--------CGUgGGCUAGG- -5'
24103 5' -56.6 NC_005262.1 + 46922 0.67 0.611703
Target:  5'- gCGGcCcGGCGCGCGgccggGCGCCUGcAUCa -3'
miRNA:   3'- -GCUaGuCCGCGCGUa----CGUGGGC-UAGg -5'
24103 5' -56.6 NC_005262.1 + 36175 0.66 0.676086
Target:  5'- aGAggAGGCGCGaGUGCAgCUCGAcggCCu -3'
miRNA:   3'- gCUagUCCGCGCgUACGU-GGGCUa--GG- -5'
24103 5' -56.6 NC_005262.1 + 39634 0.66 0.676086
Target:  5'- gGAacgugCAGGCGUGCGccuccUGcCGCCC-AUCCu -3'
miRNA:   3'- gCUa----GUCCGCGCGU-----AC-GUGGGcUAGG- -5'
24103 5' -56.6 NC_005262.1 + 32518 0.66 0.676086
Target:  5'- gCGAUCuuGGC-CGCGgacgacugcgGCugCCGAUCg -3'
miRNA:   3'- -GCUAGu-CCGcGCGUa---------CGugGGCUAGg -5'
24103 5' -56.6 NC_005262.1 + 41111 0.82 0.080256
Target:  5'- gCGGUCgAGGCGCGUcUGCGCaCUGGUCCg -3'
miRNA:   3'- -GCUAG-UCCGCGCGuACGUG-GGCUAGG- -5'
24103 5' -56.6 NC_005262.1 + 10460 0.66 0.71834
Target:  5'- gCGGUCGgcgagguagcGGCGCGCGcgGuCGCUCGccuuGUCCa -3'
miRNA:   3'- -GCUAGU----------CCGCGCGUa-C-GUGGGC----UAGG- -5'
24103 5' -56.6 NC_005262.1 + 47286 0.66 0.71834
Target:  5'- gGGUCAGccccaGCGCA-GCGCCCaGcgCCu -3'
miRNA:   3'- gCUAGUCcg---CGCGUaCGUGGG-CuaGG- -5'
24103 5' -56.6 NC_005262.1 + 34502 0.66 0.715208
Target:  5'- cCGuUCAcGGCGCGgAUGCGCUucacgagcucgucgCGGUUCg -3'
miRNA:   3'- -GCuAGU-CCGCGCgUACGUGG--------------GCUAGG- -5'
24103 5' -56.6 NC_005262.1 + 54296 0.66 0.707873
Target:  5'- gCGGUCGGGC-CGCAaaucGCACCaguGGUgCg -3'
miRNA:   3'- -GCUAGUCCGcGCGUa---CGUGGg--CUAgG- -5'
24103 5' -56.6 NC_005262.1 + 30500 0.66 0.707873
Target:  5'- aCGGcuUC-GGCGCccgGCGUGCGCgCGAUgCg -3'
miRNA:   3'- -GCU--AGuCCGCG---CGUACGUGgGCUAgG- -5'
24103 5' -56.6 NC_005262.1 + 58758 0.66 0.707873
Target:  5'- cCGAUCAGGCGCcgGCcgGCgagcaacugccGCUgGAggcagCCg -3'
miRNA:   3'- -GCUAGUCCGCG--CGuaCG-----------UGGgCUa----GG- -5'
24103 5' -56.6 NC_005262.1 + 22608 0.66 0.697334
Target:  5'- gCGGUCgccGGGCGCGCAcGCgaucgcggcgguGCCC--UCCu -3'
miRNA:   3'- -GCUAG---UCCGCGCGUaCG------------UGGGcuAGG- -5'
24103 5' -56.6 NC_005262.1 + 10422 0.66 0.686735
Target:  5'- gCGGUCugcGGCagGCGCAUgGCG-CCGAUCa -3'
miRNA:   3'- -GCUAGu--CCG--CGCGUA-CGUgGGCUAGg -5'
24103 5' -56.6 NC_005262.1 + 481 0.66 0.686735
Target:  5'- gCGA-CGcGGCGCGCGUGUuccacgucgACgCCGAgCCa -3'
miRNA:   3'- -GCUaGU-CCGCGCGUACG---------UG-GGCUaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.