Results 81 - 100 of 104 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24103 | 5' | -56.6 | NC_005262.1 | + | 481 | 0.66 | 0.686735 |
Target: 5'- gCGA-CGcGGCGCGCGUGUuccacgucgACgCCGAgCCa -3' miRNA: 3'- -GCUaGU-CCGCGCGUACG---------UG-GGCUaGG- -5' |
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24103 | 5' | -56.6 | NC_005262.1 | + | 10422 | 0.66 | 0.686735 |
Target: 5'- gCGGUCugcGGCagGCGCAUgGCG-CCGAUCa -3' miRNA: 3'- -GCUAGu--CCG--CGCGUA-CGUgGGCUAGg -5' |
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24103 | 5' | -56.6 | NC_005262.1 | + | 22608 | 0.66 | 0.697334 |
Target: 5'- gCGGUCgccGGGCGCGCAcGCgaucgcggcgguGCCC--UCCu -3' miRNA: 3'- -GCUAG---UCCGCGCGUaCG------------UGGGcuAGG- -5' |
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24103 | 5' | -56.6 | NC_005262.1 | + | 58758 | 0.66 | 0.707873 |
Target: 5'- cCGAUCAGGCGCcgGCcgGCgagcaacugccGCUgGAggcagCCg -3' miRNA: 3'- -GCUAGUCCGCG--CGuaCG-----------UGGgCUa----GG- -5' |
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24103 | 5' | -56.6 | NC_005262.1 | + | 30500 | 0.66 | 0.707873 |
Target: 5'- aCGGcuUC-GGCGCccgGCGUGCGCgCGAUgCg -3' miRNA: 3'- -GCU--AGuCCGCG---CGUACGUGgGCUAgG- -5' |
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24103 | 5' | -56.6 | NC_005262.1 | + | 54296 | 0.66 | 0.707873 |
Target: 5'- gCGGUCGGGC-CGCAaaucGCACCaguGGUgCg -3' miRNA: 3'- -GCUAGUCCGcGCGUa---CGUGGg--CUAgG- -5' |
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24103 | 5' | -56.6 | NC_005262.1 | + | 34502 | 0.66 | 0.715208 |
Target: 5'- cCGuUCAcGGCGCGgAUGCGCUucacgagcucgucgCGGUUCg -3' miRNA: 3'- -GCuAGU-CCGCGCgUACGUGG--------------GCUAGG- -5' |
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24103 | 5' | -56.6 | NC_005262.1 | + | 47286 | 0.66 | 0.71834 |
Target: 5'- gGGUCAGccccaGCGCA-GCGCCCaGcgCCu -3' miRNA: 3'- gCUAGUCcg---CGCGUaCGUGGG-CuaGG- -5' |
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24103 | 5' | -56.6 | NC_005262.1 | + | 10460 | 0.66 | 0.71834 |
Target: 5'- gCGGUCGgcgagguagcGGCGCGCGcgGuCGCUCGccuuGUCCa -3' miRNA: 3'- -GCUAGU----------CCGCGCGUa-C-GUGGGC----UAGG- -5' |
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24103 | 5' | -56.6 | NC_005262.1 | + | 32518 | 0.66 | 0.676086 |
Target: 5'- gCGAUCuuGGC-CGCGgacgacugcgGCugCCGAUCg -3' miRNA: 3'- -GCUAGu-CCGcGCGUa---------CGugGGCUAGg -5' |
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24103 | 5' | -56.6 | NC_005262.1 | + | 39634 | 0.66 | 0.676086 |
Target: 5'- gGAacgugCAGGCGUGCGccuccUGcCGCCC-AUCCu -3' miRNA: 3'- gCUa----GUCCGCGCGU-----AC-GUGGGcUAGG- -5' |
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24103 | 5' | -56.6 | NC_005262.1 | + | 6464 | 0.67 | 0.65468 |
Target: 5'- cCGGgaacGGCGCGCccagacgGUugCCGAUCUg -3' miRNA: 3'- -GCUagu-CCGCGCGua-----CGugGGCUAGG- -5' |
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24103 | 5' | -56.6 | NC_005262.1 | + | 18091 | 0.67 | 0.655753 |
Target: 5'- uCGAUCAcggccGGCugccggcccucgauGCGCAcgaagugcggcaccaUGCGCUCGAUCUg -3' miRNA: 3'- -GCUAGU-----CCG--------------CGCGU---------------ACGUGGGCUAGG- -5' |
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24103 | 5' | -56.6 | NC_005262.1 | + | 19122 | 0.66 | 0.665398 |
Target: 5'- gGAUCGGGCGCGgGcGCGuCgCCGGcgUCUu -3' miRNA: 3'- gCUAGUCCGCGCgUaCGU-G-GGCU--AGG- -5' |
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24103 | 5' | -56.6 | NC_005262.1 | + | 36476 | 0.66 | 0.665398 |
Target: 5'- uCGAgCAGGUGguCGUggaugAUGCugCCGAUCUu -3' miRNA: 3'- -GCUaGUCCGC--GCG-----UACGugGGCUAGG- -5' |
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24103 | 5' | -56.6 | NC_005262.1 | + | 46724 | 0.66 | 0.665398 |
Target: 5'- uCGA-CGGGCGCGCcuaucggcgccGUGCGCgCGAc-- -3' miRNA: 3'- -GCUaGUCCGCGCG-----------UACGUGgGCUagg -5' |
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24103 | 5' | -56.6 | NC_005262.1 | + | 29901 | 0.66 | 0.665398 |
Target: 5'- cCGAUCGGGC-CGCcgGCcgacGCaCGAUCg -3' miRNA: 3'- -GCUAGUCCGcGCGuaCG----UGgGCUAGg -5' |
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24103 | 5' | -56.6 | NC_005262.1 | + | 34142 | 0.66 | 0.675019 |
Target: 5'- gCGGgcgCGGGCG-GCAUgccgcucGCugCCGAUgCCg -3' miRNA: 3'- -GCUa--GUCCGCgCGUA-------CGugGGCUA-GG- -5' |
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24103 | 5' | -56.6 | NC_005262.1 | + | 57924 | 0.66 | 0.675019 |
Target: 5'- uCGAUCGcuucauccgcacGGUGCugaccaGCGUGCAgaugaacCCCGAUCUg -3' miRNA: 3'- -GCUAGU------------CCGCG------CGUACGU-------GGGCUAGG- -5' |
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24103 | 5' | -56.6 | NC_005262.1 | + | 36175 | 0.66 | 0.676086 |
Target: 5'- aGAggAGGCGCGaGUGCAgCUCGAcggCCu -3' miRNA: 3'- gCUagUCCGCGCgUACGU-GGGCUa--GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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