miRNA display CGI


Results 41 - 60 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24103 5' -56.6 NC_005262.1 + 2186 0.72 0.333263
Target:  5'- --uUCAGGCGCGCGcGCuucuGCUCGGUCg -3'
miRNA:   3'- gcuAGUCCGCGCGUaCG----UGGGCUAGg -5'
24103 5' -56.6 NC_005262.1 + 47801 0.7 0.466533
Target:  5'- -cGUCGGuGcCGCGC-UGCACgCCGAUCUc -3'
miRNA:   3'- gcUAGUC-C-GCGCGuACGUG-GGCUAGG- -5'
24103 5' -56.6 NC_005262.1 + 58604 0.69 0.50652
Target:  5'- uCGGUCGcgccGGcCGCGCccGCGCCCGcgacgCCg -3'
miRNA:   3'- -GCUAGU----CC-GCGCGuaCGUGGGCua---GG- -5'
24103 5' -56.6 NC_005262.1 + 1081 0.69 0.537443
Target:  5'- cCGAUCAGG-GUGCGUGCgcgauuACCC-AUCg -3'
miRNA:   3'- -GCUAGUCCgCGCGUACG------UGGGcUAGg -5'
24103 5' -56.6 NC_005262.1 + 50655 0.68 0.568991
Target:  5'- cCGcgCAGcGCGCGCGgcggaccuaauUGUGCCaCGGUUCg -3'
miRNA:   3'- -GCuaGUC-CGCGCGU-----------ACGUGG-GCUAGG- -5'
24103 5' -56.6 NC_005262.1 + 19122 0.66 0.665398
Target:  5'- gGAUCGGGCGCGgGcGCGuCgCCGGcgUCUu -3'
miRNA:   3'- gCUAGUCCGCGCgUaCGU-G-GGCU--AGG- -5'
24103 5' -56.6 NC_005262.1 + 29901 0.66 0.665398
Target:  5'- cCGAUCGGGC-CGCcgGCcgacGCaCGAUCg -3'
miRNA:   3'- -GCUAGUCCGcGCGuaCG----UGgGCUAGg -5'
24103 5' -56.6 NC_005262.1 + 61698 0.68 0.568991
Target:  5'- aCGAUCAgGGCGCGCcgGguuCGCUCGGcgcgcUCUg -3'
miRNA:   3'- -GCUAGU-CCGCGCGuaC---GUGGGCU-----AGG- -5'
24103 5' -56.6 NC_005262.1 + 10784 0.68 0.568991
Target:  5'- ---cCGGGCGCGCGguacUGCugCgCGAgcugCCg -3'
miRNA:   3'- gcuaGUCCGCGCGU----ACGugG-GCUa---GG- -5'
24103 5' -56.6 NC_005262.1 + 16867 0.68 0.579615
Target:  5'- uGAUgCAGGCGCcCGgccGCGCgCCGggCCg -3'
miRNA:   3'- gCUA-GUCCGCGcGUa--CGUG-GGCuaGG- -5'
24103 5' -56.6 NC_005262.1 + 32301 0.66 0.71834
Target:  5'- gCGAacgUCgAGGCaGCGCGUGCGCUguucaUGggCCg -3'
miRNA:   3'- -GCU---AG-UCCG-CGCGUACGUGG-----GCuaGG- -5'
24103 5' -56.6 NC_005262.1 + 26174 0.66 0.71834
Target:  5'- aCGAgu-GGCGCGCG---AUCCGAUUCa -3'
miRNA:   3'- -GCUaguCCGCGCGUacgUGGGCUAGG- -5'
24103 5' -56.6 NC_005262.1 + 6383 0.66 0.71834
Target:  5'- -aGUCAGGuCGaGCGUGCugCCG-UCg -3'
miRNA:   3'- gcUAGUCC-GCgCGUACGugGGCuAGg -5'
24103 5' -56.6 NC_005262.1 + 20833 0.68 0.579615
Target:  5'- -cAUCGcGGgGCGCG-GCACCCGcUCUa -3'
miRNA:   3'- gcUAGU-CCgCGCGUaCGUGGGCuAGG- -5'
24103 5' -56.6 NC_005262.1 + 37679 0.66 0.71834
Target:  5'- gGAUCGGGCGUGCA---GCUCG-UCg -3'
miRNA:   3'- gCUAGUCCGCGCGUacgUGGGCuAGg -5'
24103 5' -56.6 NC_005262.1 + 34566 0.66 0.707873
Target:  5'- aCGAUCcgaacgucguGuGCGCGCcgugcgGCGCCgUGAUCCa -3'
miRNA:   3'- -GCUAGu---------C-CGCGCGua----CGUGG-GCUAGG- -5'
24103 5' -56.6 NC_005262.1 + 3632 0.7 0.476381
Target:  5'- aGGUCcaucggcuGGGCGCGCA-GCuucuCCCGGUUg -3'
miRNA:   3'- gCUAG--------UCCGCGCGUaCGu---GGGCUAGg -5'
24103 5' -56.6 NC_005262.1 + 53368 0.7 0.466533
Target:  5'- uGAUC-GGCGC-CAUGCGCCUG--CCg -3'
miRNA:   3'- gCUAGuCCGCGcGUACGUGGGCuaGG- -5'
24103 5' -56.6 NC_005262.1 + 19127 0.73 0.310188
Target:  5'- gCGGUCGGGCa-GCAUGUcgauaggaACCCGGUUCa -3'
miRNA:   3'- -GCUAGUCCGcgCGUACG--------UGGGCUAGG- -5'
24103 5' -56.6 NC_005262.1 + 25874 0.68 0.59028
Target:  5'- aCGAUCgAGGCGaaGCAcgGCAUCaCGAUCg -3'
miRNA:   3'- -GCUAG-UCCGCg-CGUa-CGUGG-GCUAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.