miRNA display CGI


Results 61 - 80 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24103 5' -56.6 NC_005262.1 + 31739 0.67 0.643942
Target:  5'- gCGGUCGcauGuCGCGCAaGCGCaCGGUCCa -3'
miRNA:   3'- -GCUAGUc--C-GCGCGUaCGUGgGCUAGG- -5'
24103 5' -56.6 NC_005262.1 + 5188 0.67 0.642867
Target:  5'- gCGGgcgCGGGCGCgGCcgGCGCgaCCGAgggcguaUCCu -3'
miRNA:   3'- -GCUa--GUCCGCG-CGuaCGUG--GGCU-------AGG- -5'
24103 5' -56.6 NC_005262.1 + 8952 0.69 0.537443
Target:  5'- uCGcgCGGGCGaCGCAcucCACCC-AUCCg -3'
miRNA:   3'- -GCuaGUCCGC-GCGUac-GUGGGcUAGG- -5'
24103 5' -56.6 NC_005262.1 + 15993 0.68 0.546849
Target:  5'- aGAUC-GGCGUGCAgcgcgGCACCgacgacgagcaggCGAUCg -3'
miRNA:   3'- gCUAGuCCGCGCGUa----CGUGG-------------GCUAGg -5'
24103 5' -56.6 NC_005262.1 + 4689 0.68 0.558416
Target:  5'- gGAUCGGGC-CGCG-GCAUCCaGUCg -3'
miRNA:   3'- gCUAGUCCGcGCGUaCGUGGGcUAGg -5'
24103 5' -56.6 NC_005262.1 + 61698 0.68 0.568991
Target:  5'- aCGAUCAgGGCGCGCcgGguuCGCUCGGcgcgcUCUg -3'
miRNA:   3'- -GCUAGU-CCGCGCGuaC---GUGGGCU-----AGG- -5'
24103 5' -56.6 NC_005262.1 + 10784 0.68 0.568991
Target:  5'- ---cCGGGCGCGCGguacUGCugCgCGAgcugCCg -3'
miRNA:   3'- gcuaGUCCGCGCGU----ACGugG-GCUa---GG- -5'
24103 5' -56.6 NC_005262.1 + 16867 0.68 0.579615
Target:  5'- uGAUgCAGGCGCcCGgccGCGCgCCGggCCg -3'
miRNA:   3'- gCUA-GUCCGCGcGUa--CGUG-GGCuaGG- -5'
24103 5' -56.6 NC_005262.1 + 2810 0.66 0.665398
Target:  5'- -cGUCAGGCGCucCAccUGCGCCuCGA-CCu -3'
miRNA:   3'- gcUAGUCCGCGc-GU--ACGUGG-GCUaGG- -5'
24103 5' -56.6 NC_005262.1 + 16580 0.66 0.665398
Target:  5'- cCGAgCAGGCGCGUGUGCuGgUCGAggCg -3'
miRNA:   3'- -GCUaGUCCGCGCGUACG-UgGGCUagG- -5'
24103 5' -56.6 NC_005262.1 + 41161 0.66 0.676086
Target:  5'- ---gCAGcGCGCGCAggaggGCACCgccgCGAUCg -3'
miRNA:   3'- gcuaGUC-CGCGCGUa----CGUGG----GCUAGg -5'
24103 5' -56.6 NC_005262.1 + 32301 0.66 0.71834
Target:  5'- gCGAacgUCgAGGCaGCGCGUGCGCUguucaUGggCCg -3'
miRNA:   3'- -GCU---AG-UCCG-CGCGUACGUGG-----GCuaGG- -5'
24103 5' -56.6 NC_005262.1 + 26174 0.66 0.71834
Target:  5'- aCGAgu-GGCGCGCG---AUCCGAUUCa -3'
miRNA:   3'- -GCUaguCCGCGCGUacgUGGGCUAGG- -5'
24103 5' -56.6 NC_005262.1 + 6383 0.66 0.71834
Target:  5'- -aGUCAGGuCGaGCGUGCugCCG-UCg -3'
miRNA:   3'- gcUAGUCC-GCgCGUACGugGGCuAGg -5'
24103 5' -56.6 NC_005262.1 + 24727 0.66 0.71834
Target:  5'- uGAUCGcgcuGGCGCGCGcgaucggcgUGCGgCCGAa-- -3'
miRNA:   3'- gCUAGU----CCGCGCGU---------ACGUgGGCUagg -5'
24103 5' -56.6 NC_005262.1 + 37679 0.66 0.71834
Target:  5'- gGAUCGGGCGUGCA---GCUCG-UCg -3'
miRNA:   3'- gCUAGUCCGCGCGUacgUGGGCuAGg -5'
24103 5' -56.6 NC_005262.1 + 34566 0.66 0.707873
Target:  5'- aCGAUCcgaacgucguGuGCGCGCcgugcgGCGCCgUGAUCCa -3'
miRNA:   3'- -GCUAGu---------C-CGCGCGua----CGUGG-GCUAGG- -5'
24103 5' -56.6 NC_005262.1 + 56007 0.66 0.697334
Target:  5'- gCGcUCGaGCaGCGCAU-CACCgCGAUCCg -3'
miRNA:   3'- -GCuAGUcCG-CGCGUAcGUGG-GCUAGG- -5'
24103 5' -56.6 NC_005262.1 + 45338 0.66 0.686735
Target:  5'- aGGUCugcaAGGCgGCGCggGCGuCCUGAaCCa -3'
miRNA:   3'- gCUAG----UCCG-CGCGuaCGU-GGGCUaGG- -5'
24103 5' -56.6 NC_005262.1 + 1835 0.66 0.676086
Target:  5'- uCGccgCAGGCuGCGCAUGCgguugccuGCuuGGUCg -3'
miRNA:   3'- -GCua-GUCCG-CGCGUACG--------UGggCUAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.