miRNA display CGI


Results 81 - 100 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24103 5' -56.6 NC_005262.1 + 2810 0.66 0.665398
Target:  5'- -cGUCAGGCGCucCAccUGCGCCuCGA-CCu -3'
miRNA:   3'- gcUAGUCCGCGc-GU--ACGUGG-GCUaGG- -5'
24103 5' -56.6 NC_005262.1 + 16580 0.66 0.665398
Target:  5'- cCGAgCAGGCGCGUGUGCuGgUCGAggCg -3'
miRNA:   3'- -GCUaGUCCGCGCGUACG-UgGGCUagG- -5'
24103 5' -56.6 NC_005262.1 + 41161 0.66 0.676086
Target:  5'- ---gCAGcGCGCGCAggaggGCACCgccgCGAUCg -3'
miRNA:   3'- gcuaGUC-CGCGCGUa----CGUGG----GCUAGg -5'
24103 5' -56.6 NC_005262.1 + 1835 0.66 0.676086
Target:  5'- uCGccgCAGGCuGCGCAUGCgguugccuGCuuGGUCg -3'
miRNA:   3'- -GCua-GUCCG-CGCGUACG--------UGggCUAGg -5'
24103 5' -56.6 NC_005262.1 + 45338 0.66 0.686735
Target:  5'- aGGUCugcaAGGCgGCGCggGCGuCCUGAaCCa -3'
miRNA:   3'- gCUAG----UCCG-CGCGuaCGU-GGGCUaGG- -5'
24103 5' -56.6 NC_005262.1 + 56007 0.66 0.697334
Target:  5'- gCGcUCGaGCaGCGCAU-CACCgCGAUCCg -3'
miRNA:   3'- -GCuAGUcCG-CGCGUAcGUGG-GCUAGG- -5'
24103 5' -56.6 NC_005262.1 + 28823 0.66 0.707873
Target:  5'- --cUCGaGCuCGCGUcGCGCUCGAUCCa -3'
miRNA:   3'- gcuAGUcCGcGCGUA-CGUGGGCUAGG- -5'
24103 5' -56.6 NC_005262.1 + 34566 0.66 0.707873
Target:  5'- aCGAUCcgaacgucguGuGCGCGCcgugcgGCGCCgUGAUCCa -3'
miRNA:   3'- -GCUAGu---------C-CGCGCGua----CGUGG-GCUAGG- -5'
24103 5' -56.6 NC_005262.1 + 5188 0.67 0.642867
Target:  5'- gCGGgcgCGGGCGCgGCcgGCGCgaCCGAgggcguaUCCu -3'
miRNA:   3'- -GCUa--GUCCGCG-CGuaCGUG--GGCU-------AGG- -5'
24103 5' -56.6 NC_005262.1 + 34878 0.67 0.640718
Target:  5'- -cGUgGGGCGCGCucgcgagcauccucAUGCugCCGAagCa -3'
miRNA:   3'- gcUAgUCCGCGCG--------------UACGugGGCUagG- -5'
24103 5' -56.6 NC_005262.1 + 20833 0.68 0.579615
Target:  5'- -cAUCGcGGgGCGCG-GCACCCGcUCUa -3'
miRNA:   3'- gcUAGU-CCgCGCGUaCGUGGGCuAGG- -5'
24103 5' -56.6 NC_005262.1 + 25874 0.68 0.59028
Target:  5'- aCGAUCgAGGCGaaGCAcgGCAUCaCGAUCg -3'
miRNA:   3'- -GCUAG-UCCGCg-CGUa-CGUGG-GCUAGg -5'
24103 5' -56.6 NC_005262.1 + 49223 0.68 0.600979
Target:  5'- gCGGccUCGgcGGCGCGCAguccGCGCgCGAggUCCg -3'
miRNA:   3'- -GCU--AGU--CCGCGCGUa---CGUGgGCU--AGG- -5'
24103 5' -56.6 NC_005262.1 + 3024 0.68 0.600979
Target:  5'- uGAUCcGGCGgaagccguugaGCcgGCGCCCGGUUa -3'
miRNA:   3'- gCUAGuCCGCg----------CGuaCGUGGGCUAGg -5'
24103 5' -56.6 NC_005262.1 + 49819 0.67 0.611703
Target:  5'- cCGAUCGGccgcgcgauggaGCGCGCGaaUG-GCCCGGUgCCg -3'
miRNA:   3'- -GCUAGUC------------CGCGCGU--ACgUGGGCUA-GG- -5'
24103 5' -56.6 NC_005262.1 + 1216 0.67 0.622444
Target:  5'- uCGAUCGauuCGuCGCAcGCACCCG-UCCg -3'
miRNA:   3'- -GCUAGUcc-GC-GCGUaCGUGGGCuAGG- -5'
24103 5' -56.6 NC_005262.1 + 10704 0.67 0.633194
Target:  5'- aGAUCgAGGCcgcGCGCAcGCGgCCGGcgcUCCc -3'
miRNA:   3'- gCUAG-UCCG---CGCGUaCGUgGGCU---AGG- -5'
24103 5' -56.6 NC_005262.1 + 6858 0.67 0.633194
Target:  5'- aCGAUCAGGC-CGUaguccucggcgAUGCcgGCCgCGAUCg -3'
miRNA:   3'- -GCUAGUCCGcGCG-----------UACG--UGG-GCUAGg -5'
24103 5' -56.6 NC_005262.1 + 49682 0.67 0.633194
Target:  5'- uGGUCGgcGGCGCGCGca-ACCUGAaCCg -3'
miRNA:   3'- gCUAGU--CCGCGCGUacgUGGGCUaGG- -5'
24103 5' -56.6 NC_005262.1 + 50254 0.67 0.640718
Target:  5'- aGAUCgaccgccgcaacgaGGGCGCGCccGCGCCggcCGAgCCc -3'
miRNA:   3'- gCUAG--------------UCCGCGCGuaCGUGG---GCUaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.