miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24103 5' -56.6 NC_005262.1 + 39634 0.66 0.676086
Target:  5'- gGAacgugCAGGCGUGCGccuccUGcCGCCC-AUCCu -3'
miRNA:   3'- gCUa----GUCCGCGCGU-----AC-GUGGGcUAGG- -5'
24103 5' -56.6 NC_005262.1 + 36175 0.66 0.676086
Target:  5'- aGAggAGGCGCGaGUGCAgCUCGAcggCCu -3'
miRNA:   3'- gCUagUCCGCGCgUACGU-GGGCUa--GG- -5'
24103 5' -56.6 NC_005262.1 + 41161 0.66 0.676086
Target:  5'- ---gCAGcGCGCGCAggaggGCACCgccgCGAUCg -3'
miRNA:   3'- gcuaGUC-CGCGCGUa----CGUGG----GCUAGg -5'
24103 5' -56.6 NC_005262.1 + 1835 0.66 0.676086
Target:  5'- uCGccgCAGGCuGCGCAUGCgguugccuGCuuGGUCg -3'
miRNA:   3'- -GCua-GUCCG-CGCGUACG--------UGggCUAGg -5'
24103 5' -56.6 NC_005262.1 + 34142 0.66 0.675019
Target:  5'- gCGGgcgCGGGCG-GCAUgccgcucGCugCCGAUgCCg -3'
miRNA:   3'- -GCUa--GUCCGCgCGUA-------CGugGGCUA-GG- -5'
24103 5' -56.6 NC_005262.1 + 57924 0.66 0.675019
Target:  5'- uCGAUCGcuucauccgcacGGUGCugaccaGCGUGCAgaugaacCCCGAUCUg -3'
miRNA:   3'- -GCUAGU------------CCGCG------CGUACGU-------GGGCUAGG- -5'
24103 5' -56.6 NC_005262.1 + 19122 0.66 0.665398
Target:  5'- gGAUCGGGCGCGgGcGCGuCgCCGGcgUCUu -3'
miRNA:   3'- gCUAGUCCGCGCgUaCGU-G-GGCU--AGG- -5'
24103 5' -56.6 NC_005262.1 + 36476 0.66 0.665398
Target:  5'- uCGAgCAGGUGguCGUggaugAUGCugCCGAUCUu -3'
miRNA:   3'- -GCUaGUCCGC--GCG-----UACGugGGCUAGG- -5'
24103 5' -56.6 NC_005262.1 + 46724 0.66 0.665398
Target:  5'- uCGA-CGGGCGCGCcuaucggcgccGUGCGCgCGAc-- -3'
miRNA:   3'- -GCUaGUCCGCGCG-----------UACGUGgGCUagg -5'
24103 5' -56.6 NC_005262.1 + 29901 0.66 0.665398
Target:  5'- cCGAUCGGGC-CGCcgGCcgacGCaCGAUCg -3'
miRNA:   3'- -GCUAGUCCGcGCGuaCG----UGgGCUAGg -5'
24103 5' -56.6 NC_005262.1 + 2810 0.66 0.665398
Target:  5'- -cGUCAGGCGCucCAccUGCGCCuCGA-CCu -3'
miRNA:   3'- gcUAGUCCGCGc-GU--ACGUGG-GCUaGG- -5'
24103 5' -56.6 NC_005262.1 + 16580 0.66 0.665398
Target:  5'- cCGAgCAGGCGCGUGUGCuGgUCGAggCg -3'
miRNA:   3'- -GCUaGUCCGCGCGUACG-UgGGCUagG- -5'
24103 5' -56.6 NC_005262.1 + 32991 0.66 0.664327
Target:  5'- aCGGUCGcGGCGCagacgcagGCAgccaacgccaagcUGCGCCUGAUgCu -3'
miRNA:   3'- -GCUAGU-CCGCG--------CGU-------------ACGUGGGCUAgG- -5'
24103 5' -56.6 NC_005262.1 + 18091 0.67 0.655753
Target:  5'- uCGAUCAcggccGGCugccggcccucgauGCGCAcgaagugcggcaccaUGCGCUCGAUCUg -3'
miRNA:   3'- -GCUAGU-----CCG--------------CGCGU---------------ACGUGGGCUAGG- -5'
24103 5' -56.6 NC_005262.1 + 6464 0.67 0.65468
Target:  5'- cCGGgaacGGCGCGCccagacgGUugCCGAUCUg -3'
miRNA:   3'- -GCUagu-CCGCGCGua-----CGugGGCUAGG- -5'
24103 5' -56.6 NC_005262.1 + 31739 0.67 0.643942
Target:  5'- gCGGUCGcauGuCGCGCAaGCGCaCGGUCCa -3'
miRNA:   3'- -GCUAGUc--C-GCGCGUaCGUGgGCUAGG- -5'
24103 5' -56.6 NC_005262.1 + 5188 0.67 0.642867
Target:  5'- gCGGgcgCGGGCGCgGCcgGCGCgaCCGAgggcguaUCCu -3'
miRNA:   3'- -GCUa--GUCCGCG-CGuaCGUG--GGCU-------AGG- -5'
24103 5' -56.6 NC_005262.1 + 50254 0.67 0.640718
Target:  5'- aGAUCgaccgccgcaacgaGGGCGCGCccGCGCCggcCGAgCCc -3'
miRNA:   3'- gCUAG--------------UCCGCGCGuaCGUGG---GCUaGG- -5'
24103 5' -56.6 NC_005262.1 + 34878 0.67 0.640718
Target:  5'- -cGUgGGGCGCGCucgcgagcauccucAUGCugCCGAagCa -3'
miRNA:   3'- gcUAgUCCGCGCG--------------UACGugGGCUagG- -5'
24103 5' -56.6 NC_005262.1 + 34745 0.67 0.633194
Target:  5'- cCGAaCAcGGUGCGCGUcGUGCCgGcgCCg -3'
miRNA:   3'- -GCUaGU-CCGCGCGUA-CGUGGgCuaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.