miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24104 3' -53.1 NC_005262.1 + 52936 0.67 0.80014
Target:  5'- aCGGCcugcgccGCCUGGGcuucgccGGCGGCAAGGugCu -3'
miRNA:   3'- -GCCGa------UGGACUUc------CUGCCGUUCUugG- -5'
24104 3' -53.1 NC_005262.1 + 31072 0.67 0.80014
Target:  5'- aCGcGCUcgccgACCUGAAGGGCGaGCcgcGGCCc -3'
miRNA:   3'- -GC-CGA-----UGGACUUCCUGC-CGuucUUGG- -5'
24104 3' -53.1 NC_005262.1 + 46929 0.67 0.80014
Target:  5'- aGGCgcaaGCCUGGAuGGAUugGGC-GGAAUCg -3'
miRNA:   3'- gCCGa---UGGACUU-CCUG--CCGuUCUUGG- -5'
24104 3' -53.1 NC_005262.1 + 59518 0.68 0.78052
Target:  5'- aCGGCgaguaugGCCcGAAGGucaaGCGcGCAAuGGGCCa -3'
miRNA:   3'- -GCCGa------UGGaCUUCC----UGC-CGUU-CUUGG- -5'
24104 3' -53.1 NC_005262.1 + 359 0.68 0.78052
Target:  5'- cCGGCUGCU---GGG-UGGCGAGGAUg -3'
miRNA:   3'- -GCCGAUGGacuUCCuGCCGUUCUUGg -5'
24104 3' -53.1 NC_005262.1 + 49028 0.68 0.78052
Target:  5'- uCGGCgacGCCUgGAAGGACuGGCGu-AGCUa -3'
miRNA:   3'- -GCCGa--UGGA-CUUCCUG-CCGUucUUGG- -5'
24104 3' -53.1 NC_005262.1 + 60231 0.68 0.77451
Target:  5'- -aGCUG-CUGAAGGaauaccgcaugcacgGCGGCAAGA-CCg -3'
miRNA:   3'- gcCGAUgGACUUCC---------------UGCCGUUCUuGG- -5'
24104 3' -53.1 NC_005262.1 + 57500 0.68 0.770473
Target:  5'- cCGGCgagcGCaaGAAGG-CGGCGAaGGCCg -3'
miRNA:   3'- -GCCGa---UGgaCUUCCuGCCGUUcUUGG- -5'
24104 3' -53.1 NC_005262.1 + 30157 0.68 0.770473
Target:  5'- cCGGCggaUGCCgacgcgaagcUGAAGGAgauCGGCGAGAAg- -3'
miRNA:   3'- -GCCG---AUGG----------ACUUCCU---GCCGUUCUUgg -5'
24104 3' -53.1 NC_005262.1 + 24907 0.68 0.760283
Target:  5'- uCGGCcaGCC-GGAGGACgccgaggcauGGCGGGAugCg -3'
miRNA:   3'- -GCCGa-UGGaCUUCCUG----------CCGUUCUugG- -5'
24104 3' -53.1 NC_005262.1 + 23354 0.68 0.760283
Target:  5'- aCGGCcgGCgUGAAGcgcgcGGCGGCGAaGGCCc -3'
miRNA:   3'- -GCCGa-UGgACUUC-----CUGCCGUUcUUGG- -5'
24104 3' -53.1 NC_005262.1 + 51075 0.68 0.760283
Target:  5'- aGGUgcucGCCgcgcaGGAGGAaGGCAAGGACg -3'
miRNA:   3'- gCCGa---UGGa----CUUCCUgCCGUUCUUGg -5'
24104 3' -53.1 NC_005262.1 + 30974 0.68 0.760283
Target:  5'- gGGCgacUACCUcgugauacaGGAGGACGGCu---ACCa -3'
miRNA:   3'- gCCG---AUGGA---------CUUCCUGCCGuucuUGG- -5'
24104 3' -53.1 NC_005262.1 + 27851 0.68 0.749962
Target:  5'- gGuGCUGCCgcgucGcAAGGACGGCGgcaAGGcgGCCg -3'
miRNA:   3'- gC-CGAUGGa----C-UUCCUGCCGU---UCU--UGG- -5'
24104 3' -53.1 NC_005262.1 + 34462 0.68 0.749962
Target:  5'- gGGCUGCCcGGAGccuACGGCGuucGAGCa -3'
miRNA:   3'- gCCGAUGGaCUUCc--UGCCGUu--CUUGg -5'
24104 3' -53.1 NC_005262.1 + 38535 0.68 0.739521
Target:  5'- gCGG-UGCCaGAGGcGGC-GCAGGAGCCg -3'
miRNA:   3'- -GCCgAUGGaCUUC-CUGcCGUUCUUGG- -5'
24104 3' -53.1 NC_005262.1 + 38509 0.68 0.739521
Target:  5'- uGGCUcUCcGggGGcacggcCGGCAAGAGCUa -3'
miRNA:   3'- gCCGAuGGaCuuCCu-----GCCGUUCUUGG- -5'
24104 3' -53.1 NC_005262.1 + 60707 0.69 0.728971
Target:  5'- gCGGCUACUgcgGcaaaccGAuGACGGCGcAGAACCu -3'
miRNA:   3'- -GCCGAUGGa--C------UUcCUGCCGU-UCUUGG- -5'
24104 3' -53.1 NC_005262.1 + 1299 0.69 0.728971
Target:  5'- aCGGCUaucaGCCUGAgcAGuGACGGUGgacuucAGAGCg -3'
miRNA:   3'- -GCCGA----UGGACU--UC-CUGCCGU------UCUUGg -5'
24104 3' -53.1 NC_005262.1 + 12935 0.69 0.72791
Target:  5'- gCGGC-GCgCUGAAGGGCGuGCGcGAcggcaucGCCg -3'
miRNA:   3'- -GCCGaUG-GACUUCCUGC-CGUuCU-------UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.