Results 61 - 64 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24104 | 5' | -57.1 | NC_005262.1 | + | 29512 | 0.66 | 0.695905 |
Target: 5'- cGCGAGGG-CGUCGguGCCGUcaAGGAUgCGa -3' miRNA: 3'- -CGCUUCCaGCGGC--CGGCG--UUCUA-GCa -5' |
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24104 | 5' | -57.1 | NC_005262.1 | + | 61419 | 0.66 | 0.685336 |
Target: 5'- gGCGAAGG-CGgCGGCCG-AGGAa--- -3' miRNA: 3'- -CGCUUCCaGCgGCCGGCgUUCUagca -5' |
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24104 | 5' | -57.1 | NC_005262.1 | + | 24215 | 0.66 | 0.684276 |
Target: 5'- cGCGAcGcugCGCCGGCaCGCcgauugguugaguAAGAUCGg -3' miRNA: 3'- -CGCUuCca-GCGGCCG-GCG-------------UUCUAGCa -5' |
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24104 | 5' | -57.1 | NC_005262.1 | + | 21578 | 0.66 | 0.664063 |
Target: 5'- cGCGAgcGGGUaCGUCGuGCCGCcgacGAUCa- -3' miRNA: 3'- -CGCU--UCCA-GCGGC-CGGCGuu--CUAGca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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