miRNA display CGI


Results 41 - 60 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24104 5' -57.1 NC_005262.1 + 41667 0.67 0.610553
Target:  5'- cGCGgcGGccagacgaUUGCCGGCCacguGCAgcAGGUCGa -3'
miRNA:   3'- -CGCuuCC--------AGCGGCCGG----CGU--UCUAGCa -5'
24104 5' -57.1 NC_005262.1 + 42422 0.66 0.653379
Target:  5'- gGCGgcGccaGCCGGCCGCAAcAUCa- -3'
miRNA:   3'- -CGCuuCcagCGGCCGGCGUUcUAGca -5'
24104 5' -57.1 NC_005262.1 + 43850 0.68 0.557471
Target:  5'- cGCGgcGGUgCGCCGGCaggaccucgGCGcGAUCGc -3'
miRNA:   3'- -CGCuuCCA-GCGGCCGg--------CGUuCUAGCa -5'
24104 5' -57.1 NC_005262.1 + 45702 0.7 0.456262
Target:  5'- uCGAGGGccggcaGCCGGCCGU--GAUCGa -3'
miRNA:   3'- cGCUUCCag----CGGCCGGCGuuCUAGCa -5'
24104 5' -57.1 NC_005262.1 + 47736 0.7 0.418588
Target:  5'- ---cAGGaUCGUCGGCCGCAAG-UCGc -3'
miRNA:   3'- cgcuUCC-AGCGGCCGGCGUUCuAGCa -5'
24104 5' -57.1 NC_005262.1 + 48030 0.74 0.254878
Target:  5'- aUGAGGaaGUCGCCGGCCGgCAGGugcuUCGUc -3'
miRNA:   3'- cGCUUC--CAGCGGCCGGC-GUUCu---AGCA- -5'
24104 5' -57.1 NC_005262.1 + 49140 0.68 0.533471
Target:  5'- gGCGAAGGUCGgCacggugggcgugcaGGCCGCA---UCGg -3'
miRNA:   3'- -CGCUUCCAGCgG--------------CCGGCGUucuAGCa -5'
24104 5' -57.1 NC_005262.1 + 49583 0.69 0.512906
Target:  5'- uGCaGAAGGccgacaagaaugugUCGCuCGGCCGCGAcGUCGc -3'
miRNA:   3'- -CG-CUUCC--------------AGCG-GCCGGCGUUcUAGCa -5'
24104 5' -57.1 NC_005262.1 + 49860 0.66 0.643748
Target:  5'- gGCGgcGGUaccggaagcagcucaGCCGGCCGgAAacGGUCGa -3'
miRNA:   3'- -CGCuuCCAg--------------CGGCCGGCgUU--CUAGCa -5'
24104 5' -57.1 NC_005262.1 + 50427 0.66 0.695905
Target:  5'- cGCGAGGGccgcgugcacgUCGUCGuGCCGCGcgaGGAggaCGg -3'
miRNA:   3'- -CGCUUCC-----------AGCGGC-CGGCGU---UCUa--GCa -5'
24104 5' -57.1 NC_005262.1 + 51521 0.7 0.409468
Target:  5'- aGCucGGcUCGCCGGCCGC--GAUCGa -3'
miRNA:   3'- -CGcuUCcAGCGGCCGGCGuuCUAGCa -5'
24104 5' -57.1 NC_005262.1 + 52128 0.67 0.621255
Target:  5'- cGCGAAGcUCuGCCGGCCaGCGugcAGcgCGa -3'
miRNA:   3'- -CGCUUCcAG-CGGCCGG-CGU---UCuaGCa -5'
24104 5' -57.1 NC_005262.1 + 52698 0.69 0.475771
Target:  5'- -gGAAGGcCGCCGGCCGaCGccGGA-CGa -3'
miRNA:   3'- cgCUUCCaGCGGCCGGC-GU--UCUaGCa -5'
24104 5' -57.1 NC_005262.1 + 52942 0.7 0.437192
Target:  5'- uGCGccgccuGGGcuUCGCCGGCgGCAAGGugcUCGa -3'
miRNA:   3'- -CGCu-----UCC--AGCGGCCGgCGUUCU---AGCa -5'
24104 5' -57.1 NC_005262.1 + 53080 0.67 0.578586
Target:  5'- uGCGGGaG-CGCCGGCCGCGuGcgCGc -3'
miRNA:   3'- -CGCUUcCaGCGGCCGGCGUuCuaGCa -5'
24104 5' -57.1 NC_005262.1 + 54424 0.66 0.674718
Target:  5'- cGCGGAGG-CGCaGGCCGCcgcGcgCGc -3'
miRNA:   3'- -CGCUUCCaGCGgCCGGCGuu-CuaGCa -5'
24104 5' -57.1 NC_005262.1 + 55802 0.68 0.568004
Target:  5'- aGCaGAAcGcCGCCGGCgGCuacGAGGUCGUg -3'
miRNA:   3'- -CG-CUUcCaGCGGCCGgCG---UUCUAGCA- -5'
24104 5' -57.1 NC_005262.1 + 55942 0.71 0.400472
Target:  5'- uCGAGGG-CGgCGGCCGUcAGAUCa- -3'
miRNA:   3'- cGCUUCCaGCgGCCGGCGuUCUAGca -5'
24104 5' -57.1 NC_005262.1 + 57473 0.69 0.515971
Target:  5'- aUGGAGGUCgagggcgagaaGCCGGCCGaCGAGG-CGc -3'
miRNA:   3'- cGCUUCCAG-----------CGGCCGGC-GUUCUaGCa -5'
24104 5' -57.1 NC_005262.1 + 57812 0.67 0.631966
Target:  5'- cGgGAAGGcaUUGCCGGCuauCGCAcGAUCa- -3'
miRNA:   3'- -CgCUUCC--AGCGGCCG---GCGUuCUAGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.