miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24104 5' -57.1 NC_005262.1 + 45702 0.7 0.456262
Target:  5'- uCGAGGGccggcaGCCGGCCGU--GAUCGa -3'
miRNA:   3'- cGCUUCCag----CGGCCGGCGuuCUAGCa -5'
24104 5' -57.1 NC_005262.1 + 43850 0.68 0.557471
Target:  5'- cGCGgcGGUgCGCCGGCaggaccucgGCGcGAUCGc -3'
miRNA:   3'- -CGCuuCCA-GCGGCCGg--------CGUuCUAGCa -5'
24104 5' -57.1 NC_005262.1 + 42422 0.66 0.653379
Target:  5'- gGCGgcGccaGCCGGCCGCAAcAUCa- -3'
miRNA:   3'- -CGCuuCcagCGGCCGGCGUUcUAGca -5'
24104 5' -57.1 NC_005262.1 + 41667 0.67 0.610553
Target:  5'- cGCGgcGGccagacgaUUGCCGGCCacguGCAgcAGGUCGa -3'
miRNA:   3'- -CGCuuCC--------AGCGGCCGG----CGU--UCUAGCa -5'
24104 5' -57.1 NC_005262.1 + 39244 0.68 0.526238
Target:  5'- cGCGAucagcAGGaucaCGCCGGCgauCGCgAAGGUCGUc -3'
miRNA:   3'- -CGCU-----UCCa---GCGGCCG---GCG-UUCUAGCA- -5'
24104 5' -57.1 NC_005262.1 + 38956 0.72 0.341155
Target:  5'- gGCGcAGGGUgaucggcacggCGCCGGCCGC--GAUCGc -3'
miRNA:   3'- -CGC-UUCCA-----------GCGGCCGGCGuuCUAGCa -5'
24104 5' -57.1 NC_005262.1 + 38052 0.7 0.409468
Target:  5'- cGUGAGcGGcUUGCCGGCCuGCGcGAUCGc -3'
miRNA:   3'- -CGCUU-CC-AGCGGCCGG-CGUuCUAGCa -5'
24104 5' -57.1 NC_005262.1 + 36898 0.66 0.642677
Target:  5'- cGCGGAugaucgacaacGGacgCGCCGGCCaCucGAUCGUg -3'
miRNA:   3'- -CGCUU-----------CCa--GCGGCCGGcGuuCUAGCA- -5'
24104 5' -57.1 NC_005262.1 + 35226 0.71 0.357437
Target:  5'- uGCGGAGGUCGgCGGC-GC--GAUCGg -3'
miRNA:   3'- -CGCUUCCAGCgGCCGgCGuuCUAGCa -5'
24104 5' -57.1 NC_005262.1 + 34961 0.67 0.599868
Target:  5'- uCGAcgcGG-CGCuCGGCCGCAAG-UCGa -3'
miRNA:   3'- cGCUu--CCaGCG-GCCGGCGUUCuAGCa -5'
24104 5' -57.1 NC_005262.1 + 34162 0.69 0.495686
Target:  5'- cCGGccGUCGCCGGCaCG-AAGGUCGa -3'
miRNA:   3'- cGCUucCAGCGGCCG-GCgUUCUAGCa -5'
24104 5' -57.1 NC_005262.1 + 33700 0.73 0.294858
Target:  5'- gGC-AAGGUC-CCGGCCGCcaacaugAAGAUCGa -3'
miRNA:   3'- -CGcUUCCAGcGGCCGGCG-------UUCUAGCa -5'
24104 5' -57.1 NC_005262.1 + 32176 0.67 0.599868
Target:  5'- -aGAAGGcggCGgCGGCgGCAgaAGGUCGg -3'
miRNA:   3'- cgCUUCCa--GCgGCCGgCGU--UCUAGCa -5'
24104 5' -57.1 NC_005262.1 + 31475 0.66 0.671526
Target:  5'- aGCGuuGGUcCGCCGaccucgccgucgacGuCCGCAAGAagUCGUa -3'
miRNA:   3'- -CGCuuCCA-GCGGC--------------C-GGCGUUCU--AGCA- -5'
24104 5' -57.1 NC_005262.1 + 31438 0.68 0.568004
Target:  5'- aGCGGAGGcCGuuGGCCGUgccguaggcGAUCa- -3'
miRNA:   3'- -CGCUUCCaGCggCCGGCGuu-------CUAGca -5'
24104 5' -57.1 NC_005262.1 + 30872 0.7 0.437192
Target:  5'- cCGAGGaGUCGCCGaGCgGCcGGAUgGUg -3'
miRNA:   3'- cGCUUC-CAGCGGC-CGgCGuUCUAgCA- -5'
24104 5' -57.1 NC_005262.1 + 30848 0.73 0.295577
Target:  5'- aCGguGGUUGCCGGUCGgAGcGAUCGUg -3'
miRNA:   3'- cGCuuCCAGCGGCCGGCgUU-CUAGCA- -5'
24104 5' -57.1 NC_005262.1 + 30211 0.67 0.596668
Target:  5'- uGCGguGGccucgaucgugaucUCGCCGGCCuCGAGcUCGUc -3'
miRNA:   3'- -CGCuuCC--------------AGCGGCCGGcGUUCuAGCA- -5'
24104 5' -57.1 NC_005262.1 + 30092 0.69 0.511886
Target:  5'- -aGAAGGgcgacgacaCGCCGGCCGCcgcgaagcccacGAUCGUg -3'
miRNA:   3'- cgCUUCCa--------GCGGCCGGCGuu----------CUAGCA- -5'
24104 5' -57.1 NC_005262.1 + 29901 0.73 0.302832
Target:  5'- cCGAucGGGcCGCCGGCCgacGCAcGAUCGUc -3'
miRNA:   3'- cGCU--UCCaGCGGCCGG---CGUuCUAGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.