Results 61 - 64 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24104 | 5' | -57.1 | NC_005262.1 | + | 5029 | 0.67 | 0.578586 |
Target: 5'- aGCGGcAGuugcUCGCCGGCCGgCGccuGAUCGg -3' miRNA: 3'- -CGCU-UCc---AGCGGCCGGC-GUu--CUAGCa -5' |
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24104 | 5' | -57.1 | NC_005262.1 | + | 4824 | 0.66 | 0.653379 |
Target: 5'- gGCGuGAGGcCGCCGGCgGCcGGcugguUCGa -3' miRNA: 3'- -CGC-UUCCaGCGGCCGgCGuUCu----AGCa -5' |
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24104 | 5' | -57.1 | NC_005262.1 | + | 3672 | 0.7 | 0.44667 |
Target: 5'- cGCGGccGUCGCUGGCCGUGAcGA-CGg -3' miRNA: 3'- -CGCUucCAGCGGCCGGCGUU-CUaGCa -5' |
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24104 | 5' | -57.1 | NC_005262.1 | + | 1915 | 0.67 | 0.621255 |
Target: 5'- gGCGGAGGgUGCgGGuuGCGuggcucgcuGGUCGUa -3' miRNA: 3'- -CGCUUCCaGCGgCCggCGUu--------CUAGCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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