miRNA display CGI


Results 41 - 60 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24104 5' -57.1 NC_005262.1 + 39244 0.68 0.526238
Target:  5'- cGCGAucagcAGGaucaCGCCGGCgauCGCgAAGGUCGUc -3'
miRNA:   3'- -CGCU-----UCCa---GCGGCCG---GCG-UUCUAGCA- -5'
24104 5' -57.1 NC_005262.1 + 22603 0.7 0.42783
Target:  5'- uCGAAgcGGUCGCCGGgCGCGcacgcGAUCGc -3'
miRNA:   3'- cGCUU--CCAGCGGCCgGCGUu----CUAGCa -5'
24104 5' -57.1 NC_005262.1 + 47736 0.7 0.418588
Target:  5'- ---cAGGaUCGUCGGCCGCAAG-UCGc -3'
miRNA:   3'- cgcuUCC-AGCGGCCGGCGUUCuAGCa -5'
24104 5' -57.1 NC_005262.1 + 51521 0.7 0.409468
Target:  5'- aGCucGGcUCGCCGGCCGC--GAUCGa -3'
miRNA:   3'- -CGcuUCcAGCGGCCGGCGuuCUAGCa -5'
24104 5' -57.1 NC_005262.1 + 38052 0.7 0.409468
Target:  5'- cGUGAGcGGcUUGCCGGCCuGCGcGAUCGc -3'
miRNA:   3'- -CGCUU-CC-AGCGGCCGG-CGUuCUAGCa -5'
24104 5' -57.1 NC_005262.1 + 38956 0.72 0.341155
Target:  5'- gGCGcAGGGUgaucggcacggCGCCGGCCGC--GAUCGc -3'
miRNA:   3'- -CGC-UUCCA-----------GCGGCCGGCGuuCUAGCa -5'
24104 5' -57.1 NC_005262.1 + 12262 0.73 0.310224
Target:  5'- cGCGAGccGGUCGCCGuGUugCGCAcGGUCGUc -3'
miRNA:   3'- -CGCUU--CCAGCGGC-CG--GCGUuCUAGCA- -5'
24104 5' -57.1 NC_005262.1 + 18536 0.67 0.610553
Target:  5'- cGCGuucgacgcuccGAGGUUGCCGGUCGcCGAGuugccggCGUu -3'
miRNA:   3'- -CGC-----------UUCCAGCGGCCGGC-GUUCua-----GCA- -5'
24104 5' -57.1 NC_005262.1 + 15412 0.67 0.614832
Target:  5'- aGCGAGgcgcGGUCguaacccgacugauaGCCGGCCGCcagcagcgccGGGUCGg -3'
miRNA:   3'- -CGCUU----CCAG---------------CGGCCGGCGu---------UCUAGCa -5'
24104 5' -57.1 NC_005262.1 + 10859 0.66 0.695905
Target:  5'- gGCGAagcccAGGcggCGCaGGCCGUcguAGAUCGa -3'
miRNA:   3'- -CGCU-----UCCa--GCGgCCGGCGu--UCUAGCa -5'
24104 5' -57.1 NC_005262.1 + 22421 0.66 0.664063
Target:  5'- cGCGuAGGUCaGCCGuGCCGU----UCGUg -3'
miRNA:   3'- -CGCuUCCAG-CGGC-CGGCGuucuAGCA- -5'
24104 5' -57.1 NC_005262.1 + 21578 0.66 0.664063
Target:  5'- cGCGAgcGGGUaCGUCGuGCCGCcgacGAUCa- -3'
miRNA:   3'- -CGCU--UCCA-GCGGC-CGGCGuu--CUAGca -5'
24104 5' -57.1 NC_005262.1 + 4824 0.66 0.653379
Target:  5'- gGCGuGAGGcCGCCGGCgGCcGGcugguUCGa -3'
miRNA:   3'- -CGC-UUCCaGCGGCCGgCGuUCu----AGCa -5'
24104 5' -57.1 NC_005262.1 + 6377 0.66 0.642677
Target:  5'- cCGGAGcGUUGUCGGCCGCcuucUCGg -3'
miRNA:   3'- cGCUUC-CAGCGGCCGGCGuucuAGCa -5'
24104 5' -57.1 NC_005262.1 + 36898 0.66 0.642677
Target:  5'- cGCGGAugaucgacaacGGacgCGCCGGCCaCucGAUCGUg -3'
miRNA:   3'- -CGCUU-----------CCa--GCGGCCGGcGuuCUAGCA- -5'
24104 5' -57.1 NC_005262.1 + 9681 0.66 0.642677
Target:  5'- gGCGAGGG-CGCCgucgacgucgaGGCgcaGCAgcGGGUCGUu -3'
miRNA:   3'- -CGCUUCCaGCGG-----------CCGg--CGU--UCUAGCA- -5'
24104 5' -57.1 NC_005262.1 + 23142 0.67 0.631966
Target:  5'- cGUGGgucGGGUCGCUGacGCCGUgcccguggccGGGGUCGUu -3'
miRNA:   3'- -CGCU---UCCAGCGGC--CGGCG----------UUCUAGCA- -5'
24104 5' -57.1 NC_005262.1 + 12789 0.67 0.631966
Target:  5'- gGCGc-GGUCGCCGGUCGCuuccUUGg -3'
miRNA:   3'- -CGCuuCCAGCGGCCGGCGuucuAGCa -5'
24104 5' -57.1 NC_005262.1 + 52128 0.67 0.621255
Target:  5'- cGCGAAGcUCuGCCGGCCaGCGugcAGcgCGa -3'
miRNA:   3'- -CGCUUCcAG-CGGCCGG-CGU---UCuaGCa -5'
24104 5' -57.1 NC_005262.1 + 10634 0.67 0.621255
Target:  5'- cGCGAagggcGGGUUGCCGaucGCCGCGucgaAGAacUCGc -3'
miRNA:   3'- -CGCU-----UCCAGCGGC---CGGCGU----UCU--AGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.