miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24104 5' -57.1 NC_005262.1 + 30848 0.73 0.295577
Target:  5'- aCGguGGUUGCCGGUCGgAGcGAUCGUg -3'
miRNA:   3'- cGCuuCCAGCGGCCGGCgUU-CUAGCA- -5'
24104 5' -57.1 NC_005262.1 + 39244 0.68 0.526238
Target:  5'- cGCGAucagcAGGaucaCGCCGGCgauCGCgAAGGUCGUc -3'
miRNA:   3'- -CGCU-----UCCa---GCGGCCG---GCG-UUCUAGCA- -5'
24104 5' -57.1 NC_005262.1 + 23142 0.67 0.631966
Target:  5'- cGUGGgucGGGUCGCUGacGCCGUgcccguggccGGGGUCGUu -3'
miRNA:   3'- -CGCU---UCCAGCGGC--CGGCG----------UUCUAGCA- -5'
24104 5' -57.1 NC_005262.1 + 38052 0.7 0.409468
Target:  5'- cGUGAGcGGcUUGCCGGCCuGCGcGAUCGc -3'
miRNA:   3'- -CGCUU-CC-AGCGGCCGG-CGUuCUAGCa -5'
24104 5' -57.1 NC_005262.1 + 48030 0.74 0.254878
Target:  5'- aUGAGGaaGUCGCCGGCCGgCAGGugcuUCGUc -3'
miRNA:   3'- cGCUUC--CAGCGGCCGGC-GUUCu---AGCA- -5'
24104 5' -57.1 NC_005262.1 + 29901 0.73 0.302832
Target:  5'- cCGAucGGGcCGCCGGCCgacGCAcGAUCGUc -3'
miRNA:   3'- cGCU--UCCaGCGGCCGG---CGUuCUAGCA- -5'
24104 5' -57.1 NC_005262.1 + 9681 0.66 0.642677
Target:  5'- gGCGAGGG-CGCCgucgacgucgaGGCgcaGCAgcGGGUCGUu -3'
miRNA:   3'- -CGCUUCCaGCGG-----------CCGg--CGU--UCUAGCA- -5'
24104 5' -57.1 NC_005262.1 + 36898 0.66 0.642677
Target:  5'- cGCGGAugaucgacaacGGacgCGCCGGCCaCucGAUCGUg -3'
miRNA:   3'- -CGCUU-----------CCa--GCGGCCGGcGuuCUAGCA- -5'
24104 5' -57.1 NC_005262.1 + 22603 0.7 0.42783
Target:  5'- uCGAAgcGGUCGCCGGgCGCGcacgcGAUCGc -3'
miRNA:   3'- cGCUU--CCAGCGGCCgGCGUu----CUAGCa -5'
24104 5' -57.1 NC_005262.1 + 30872 0.7 0.437192
Target:  5'- cCGAGGaGUCGCCGaGCgGCcGGAUgGUg -3'
miRNA:   3'- cGCUUC-CAGCGGC-CGgCGuUCUAgCA- -5'
24104 5' -57.1 NC_005262.1 + 21685 0.66 0.675782
Target:  5'- aGCGgcGG-CGCCGcGCUGCuguacgcgggcacgcAGAUCGg -3'
miRNA:   3'- -CGCuuCCaGCGGC-CGGCGu--------------UCUAGCa -5'
24104 5' -57.1 NC_005262.1 + 57473 0.69 0.515971
Target:  5'- aUGGAGGUCgagggcgagaaGCCGGCCGaCGAGG-CGc -3'
miRNA:   3'- cGCUUCCAG-----------CGGCCGGC-GUUCUaGCa -5'
24104 5' -57.1 NC_005262.1 + 49583 0.69 0.512906
Target:  5'- uGCaGAAGGccgacaagaaugugUCGCuCGGCCGCGAcGUCGc -3'
miRNA:   3'- -CG-CUUCC--------------AGCG-GCCGGCGUUcUAGCa -5'
24104 5' -57.1 NC_005262.1 + 30092 0.69 0.511886
Target:  5'- -aGAAGGgcgacgacaCGCCGGCCGCcgcgaagcccacGAUCGUg -3'
miRNA:   3'- cgCUUCCa--------GCGGCCGGCGuu----------CUAGCA- -5'
24104 5' -57.1 NC_005262.1 + 13687 0.66 0.642677
Target:  5'- cGCGcgcGGU-GCUGGCgCGUGAGGUCGa -3'
miRNA:   3'- -CGCuu-CCAgCGGCCG-GCGUUCUAGCa -5'
24104 5' -57.1 NC_005262.1 + 49860 0.66 0.643748
Target:  5'- gGCGgcGGUaccggaagcagcucaGCCGGCCGgAAacGGUCGa -3'
miRNA:   3'- -CGCuuCCAg--------------CGGCCGGCgUU--CUAGCa -5'
24104 5' -57.1 NC_005262.1 + 42422 0.66 0.653379
Target:  5'- gGCGgcGccaGCCGGCCGCAAcAUCa- -3'
miRNA:   3'- -CGCuuCcagCGGCCGGCGUUcUAGca -5'
24104 5' -57.1 NC_005262.1 + 29181 0.66 0.664063
Target:  5'- gGCGGccGUCGCCGaGCUGaugGAGGUCa- -3'
miRNA:   3'- -CGCUucCAGCGGC-CGGCg--UUCUAGca -5'
24104 5' -57.1 NC_005262.1 + 31475 0.66 0.671526
Target:  5'- aGCGuuGGUcCGCCGaccucgccgucgacGuCCGCAAGAagUCGUa -3'
miRNA:   3'- -CGCuuCCA-GCGGC--------------C-GGCGUUCU--AGCA- -5'
24104 5' -57.1 NC_005262.1 + 54424 0.66 0.674718
Target:  5'- cGCGGAGG-CGCaGGCCGCcgcGcgCGc -3'
miRNA:   3'- -CGCUUCCaGCGgCCGGCGuu-CuaGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.