miRNA display CGI


Results 41 - 60 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24104 5' -57.1 NC_005262.1 + 52698 0.69 0.475771
Target:  5'- -gGAAGGcCGCCGGCCGaCGccGGA-CGa -3'
miRNA:   3'- cgCUUCCaGCGGCCGGC-GU--UCUaGCa -5'
24104 5' -57.1 NC_005262.1 + 17688 0.7 0.456262
Target:  5'- gGCGAAGaa-GCCGGCCGU--GGUCGc -3'
miRNA:   3'- -CGCUUCcagCGGCCGGCGuuCUAGCa -5'
24104 5' -57.1 NC_005262.1 + 45702 0.7 0.456262
Target:  5'- uCGAGGGccggcaGCCGGCCGU--GAUCGa -3'
miRNA:   3'- cGCUUCCag----CGGCCGGCGuuCUAGCa -5'
24104 5' -57.1 NC_005262.1 + 30872 0.7 0.437192
Target:  5'- cCGAGGaGUCGCCGaGCgGCcGGAUgGUg -3'
miRNA:   3'- cGCUUC-CAGCGGC-CGgCGuUCUAgCA- -5'
24104 5' -57.1 NC_005262.1 + 52942 0.7 0.437192
Target:  5'- uGCGccgccuGGGcuUCGCCGGCgGCAAGGugcUCGa -3'
miRNA:   3'- -CGCu-----UCC--AGCGGCCGgCGUUCU---AGCa -5'
24104 5' -57.1 NC_005262.1 + 55942 0.71 0.400472
Target:  5'- uCGAGGG-CGgCGGCCGUcAGAUCa- -3'
miRNA:   3'- cGCUUCCaGCgGCCGGCGuUCUAGca -5'
24104 5' -57.1 NC_005262.1 + 55802 0.68 0.568004
Target:  5'- aGCaGAAcGcCGCCGGCgGCuacGAGGUCGUg -3'
miRNA:   3'- -CG-CUUcCaGCGGCCGgCG---UUCUAGCA- -5'
24104 5' -57.1 NC_005262.1 + 5029 0.67 0.578586
Target:  5'- aGCGGcAGuugcUCGCCGGCCGgCGccuGAUCGg -3'
miRNA:   3'- -CGCU-UCc---AGCGGCCGGC-GUu--CUAGCa -5'
24104 5' -57.1 NC_005262.1 + 61419 0.66 0.685336
Target:  5'- gGCGAAGG-CGgCGGCCG-AGGAa--- -3'
miRNA:   3'- -CGCUUCCaGCgGCCGGCgUUCUagca -5'
24104 5' -57.1 NC_005262.1 + 24215 0.66 0.684276
Target:  5'- cGCGAcGcugCGCCGGCaCGCcgauugguugaguAAGAUCGg -3'
miRNA:   3'- -CGCUuCca-GCGGCCG-GCG-------------UUCUAGCa -5'
24104 5' -57.1 NC_005262.1 + 21685 0.66 0.675782
Target:  5'- aGCGgcGG-CGCCGcGCUGCuguacgcgggcacgcAGAUCGg -3'
miRNA:   3'- -CGCuuCCaGCGGC-CGGCGu--------------UCUAGCa -5'
24104 5' -57.1 NC_005262.1 + 54424 0.66 0.674718
Target:  5'- cGCGGAGG-CGCaGGCCGCcgcGcgCGc -3'
miRNA:   3'- -CGCUUCCaGCGgCCGGCGuu-CuaGCa -5'
24104 5' -57.1 NC_005262.1 + 31475 0.66 0.671526
Target:  5'- aGCGuuGGUcCGCCGaccucgccgucgacGuCCGCAAGAagUCGUa -3'
miRNA:   3'- -CGCuuCCA-GCGGC--------------C-GGCGUUCU--AGCA- -5'
24104 5' -57.1 NC_005262.1 + 29181 0.66 0.664063
Target:  5'- gGCGGccGUCGCCGaGCUGaugGAGGUCa- -3'
miRNA:   3'- -CGCUucCAGCGGC-CGGCg--UUCUAGca -5'
24104 5' -57.1 NC_005262.1 + 42422 0.66 0.653379
Target:  5'- gGCGgcGccaGCCGGCCGCAAcAUCa- -3'
miRNA:   3'- -CGCuuCcagCGGCCGGCGUUcUAGca -5'
24104 5' -57.1 NC_005262.1 + 49860 0.66 0.643748
Target:  5'- gGCGgcGGUaccggaagcagcucaGCCGGCCGgAAacGGUCGa -3'
miRNA:   3'- -CGCuuCCAg--------------CGGCCGGCgUU--CUAGCa -5'
24104 5' -57.1 NC_005262.1 + 57812 0.67 0.631966
Target:  5'- cGgGAAGGcaUUGCCGGCuauCGCAcGAUCa- -3'
miRNA:   3'- -CgCUUCC--AGCGGCCG---GCGUuCUAGca -5'
24104 5' -57.1 NC_005262.1 + 1915 0.67 0.621255
Target:  5'- gGCGGAGGgUGCgGGuuGCGuggcucgcuGGUCGUa -3'
miRNA:   3'- -CGCUUCCaGCGgCCggCGUu--------CUAGCA- -5'
24104 5' -57.1 NC_005262.1 + 34961 0.67 0.599868
Target:  5'- uCGAcgcGG-CGCuCGGCCGCAAG-UCGa -3'
miRNA:   3'- cGCUu--CCaGCG-GCCGGCGUUCuAGCa -5'
24104 5' -57.1 NC_005262.1 + 32176 0.67 0.599868
Target:  5'- -aGAAGGcggCGgCGGCgGCAgaAGGUCGg -3'
miRNA:   3'- cgCUUCCa--GCgGCCGgCGU--UCUAGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.