miRNA display CGI


Results 21 - 40 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24105 3' -64.8 NC_005262.1 + 35645 0.66 0.307934
Target:  5'- cGGCGGGCGAuggGCUacuCGGuGC-CGCaGCu -3'
miRNA:   3'- -CCGCCCGCU---CGAcu-GCC-CGcGCGcCG- -5'
24105 3' -64.8 NC_005262.1 + 7524 0.66 0.315029
Target:  5'- -uCGGGCaGGUUcGGC-GGCGCGuCGGCg -3'
miRNA:   3'- ccGCCCGcUCGA-CUGcCCGCGC-GCCG- -5'
24105 3' -64.8 NC_005262.1 + 34950 0.66 0.315029
Target:  5'- cGGC-GGCaAGUUcGACGcGGCGCuCGGCc -3'
miRNA:   3'- -CCGcCCGcUCGA-CUGC-CCGCGcGCCG- -5'
24105 3' -64.8 NC_005262.1 + 58563 0.66 0.315029
Target:  5'- aGGC-GGCGAgaaGCUGAUcGGCaCGcCGGCa -3'
miRNA:   3'- -CCGcCCGCU---CGACUGcCCGcGC-GCCG- -5'
24105 3' -64.8 NC_005262.1 + 15500 0.66 0.322247
Target:  5'- cGGCGgcucgcucaccGGCGAGCUGcACaaGGCGaUGUGGUu -3'
miRNA:   3'- -CCGC-----------CCGCUCGAC-UGc-CCGC-GCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 34852 0.66 0.322247
Target:  5'- cGCGcGCGAGCacaUGACccucaucucgugGGGCGCGCucGCg -3'
miRNA:   3'- cCGCcCGCUCG---ACUG------------CCCGCGCGc-CG- -5'
24105 3' -64.8 NC_005262.1 + 40544 0.66 0.328848
Target:  5'- cGGCGGGCG-GCUcuuacgcGcCGGGCaacaccgGCGGUg -3'
miRNA:   3'- -CCGCCCGCuCGA-------CuGCCCGcg-----CGCCG- -5'
24105 3' -64.8 NC_005262.1 + 24786 0.66 0.329588
Target:  5'- -cCGGGCGAGCacuucGACaucgcgaaGGGCaaGCGCGaGCu -3'
miRNA:   3'- ccGCCCGCUCGa----CUG--------CCCG--CGCGC-CG- -5'
24105 3' -64.8 NC_005262.1 + 44147 0.66 0.337051
Target:  5'- cGGcCGGacGCGcGCgcGAuCGGGCaggaGCGCGGCg -3'
miRNA:   3'- -CC-GCC--CGCuCGa-CU-GCCCG----CGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 48468 0.67 0.266669
Target:  5'- cGCGGaucGCGAGCcgcgugggcacgGGC-GGCGCGaCGGCa -3'
miRNA:   3'- cCGCC---CGCUCGa-----------CUGcCCGCGC-GCCG- -5'
24105 3' -64.8 NC_005262.1 + 26336 0.67 0.267927
Target:  5'- uGCucGagGAGCUGAugcCGGGCGUGCGGUu -3'
miRNA:   3'- cCGccCg-CUCGACU---GCCCGCGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 17099 0.67 0.267927
Target:  5'- cGGCGGGCcgcGAGgaGGuCcacCGCGCGGCg -3'
miRNA:   3'- -CCGCCCG---CUCgaCU-GcccGCGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 36533 0.67 0.267927
Target:  5'- cGGCGcGGCGA-CUGGgauuauCGGGCGCacgauccucGCGGa -3'
miRNA:   3'- -CCGC-CCGCUcGACU------GCCCGCG---------CGCCg -5'
24105 3' -64.8 NC_005262.1 + 43387 0.67 0.274292
Target:  5'- cGGCGauGCGAGCaucGGCGGcgaGCucaacgGCGCGGCg -3'
miRNA:   3'- -CCGCc-CGCUCGa--CUGCC---CG------CGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 24733 0.67 0.261683
Target:  5'- cGCuGGCGcGCgcGAUcGGCGUGCGGCc -3'
miRNA:   3'- cCGcCCGCuCGa-CUGcCCGCGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 10762 0.67 0.293433
Target:  5'- cGGuUGuGGUGAuccgcccGCgc-CGGGCGCGCGGUa -3'
miRNA:   3'- -CC-GC-CCGCU-------CGacuGCCCGCGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 17036 0.67 0.294111
Target:  5'- aGGCGGaaaagcagcuccGCGAGCUcGuCGcGCGCaCGGCg -3'
miRNA:   3'- -CCGCC------------CGCUCGA-CuGCcCGCGcGCCG- -5'
24105 3' -64.8 NC_005262.1 + 33970 0.67 0.285388
Target:  5'- cGCGGcGuCGAGCUgcugGACgucgugcguaacauGGGCGCGgaCGGCg -3'
miRNA:   3'- cCGCC-C-GCUCGA----CUG--------------CCCGCGC--GCCG- -5'
24105 3' -64.8 NC_005262.1 + 20579 0.67 0.294111
Target:  5'- aGCccGGCGAGCaGcGCGcGGCGCGCcGCa -3'
miRNA:   3'- cCGc-CCGCUCGaC-UGC-CCGCGCGcCG- -5'
24105 3' -64.8 NC_005262.1 + 43663 0.67 0.286052
Target:  5'- uGGCacguGGCGAcCUGAacgcaagccaagcCGGGCcgaauucGCGCGGCg -3'
miRNA:   3'- -CCGc---CCGCUcGACU-------------GCCCG-------CGCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.