miRNA display CGI


Results 61 - 80 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24105 3' -64.8 NC_005262.1 + 1910 0.68 0.255557
Target:  5'- aGCgGGGCGgaGGgUG-CGGGuUGCGUGGCu -3'
miRNA:   3'- cCG-CCCGC--UCgACuGCCC-GCGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 37906 0.68 0.255557
Target:  5'- uGGUGGcGCGGGCUauaucgcgugGACGauuGGCGCGCa-- -3'
miRNA:   3'- -CCGCC-CGCUCGA----------CUGC---CCGCGCGccg -5'
24105 3' -64.8 NC_005262.1 + 60639 0.69 0.215924
Target:  5'- uGGCGagcGGCGAGCaccGCGGGCaagcacucaucGCGCucGGCa -3'
miRNA:   3'- -CCGC---CCGCUCGac-UGCCCG-----------CGCG--CCG- -5'
24105 3' -64.8 NC_005262.1 + 3725 0.69 0.215924
Target:  5'- aGCuGGGCcuGCgccugGAUGGGUuccGCGCGGCu -3'
miRNA:   3'- cCG-CCCGcuCGa----CUGCCCG---CGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 50740 0.69 0.207638
Target:  5'- aGGCcGGCGAgacgcacgagaucguGCaGACGGGCaagGUGCGGUu -3'
miRNA:   3'- -CCGcCCGCU---------------CGaCUGCCCG---CGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 17213 0.69 0.189523
Target:  5'- cGGCGaGGaCGGcGCUGGCgucguggucgucguGGGCGuCGCGGg -3'
miRNA:   3'- -CCGC-CC-GCU-CGACUG--------------CCCGC-GCGCCg -5'
24105 3' -64.8 NC_005262.1 + 17394 0.69 0.205609
Target:  5'- uGCGGGCccAGCccGACGaGGCGCGCcuguucGGCc -3'
miRNA:   3'- cCGCCCGc-UCGa-CUGC-CCGCGCG------CCG- -5'
24105 3' -64.8 NC_005262.1 + 37158 0.69 0.195724
Target:  5'- aGGCGGuGCGccAGCUacGCGGGCGCuucgauuugcccGCGGg -3'
miRNA:   3'- -CCGCC-CGC--UCGAc-UGCCCGCG------------CGCCg -5'
24105 3' -64.8 NC_005262.1 + 13792 0.69 0.195241
Target:  5'- cGGUGGGCGccggcgcGGCUucaucGGCGGGaGCG-GGCg -3'
miRNA:   3'- -CCGCCCGC-------UCGA-----CUGCCCgCGCgCCG- -5'
24105 3' -64.8 NC_005262.1 + 12806 0.69 0.200614
Target:  5'- gGGCGGcGCGcAGCcGGCGcgugaagaaGGaGCGCGGCc -3'
miRNA:   3'- -CCGCC-CGC-UCGaCUGC---------CCgCGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 35235 0.69 0.195724
Target:  5'- cGGCGGcGCGAucgGCagcGGCuGGGCGCcccCGGCg -3'
miRNA:   3'- -CCGCC-CGCU---CGa--CUG-CCCGCGc--GCCG- -5'
24105 3' -64.8 NC_005262.1 + 15574 0.69 0.215924
Target:  5'- aGCaGGagGAGCUGGa-GGCGCGCGcGCg -3'
miRNA:   3'- cCGcCCg-CUCGACUgcCCGCGCGC-CG- -5'
24105 3' -64.8 NC_005262.1 + 12447 0.69 0.195241
Target:  5'- cGCGGuGcCGAGCUGcaugGCGGauucgaucuugccGCGCGCGGa -3'
miRNA:   3'- cCGCC-C-GCUCGAC----UGCC-------------CGCGCGCCg -5'
24105 3' -64.8 NC_005262.1 + 43835 0.7 0.164337
Target:  5'- cGCGGGCcGGCcgcgcgcGGCGGuGCGC-CGGCa -3'
miRNA:   3'- cCGCCCGcUCGa------CUGCC-CGCGcGCCG- -5'
24105 3' -64.8 NC_005262.1 + 49154 0.7 0.168104
Target:  5'- cGGUGGGCGuGCaGGCcgcaucggccgcaGcGGCGCGCacGGCg -3'
miRNA:   3'- -CCGCCCGCuCGaCUG-------------C-CCGCGCG--CCG- -5'
24105 3' -64.8 NC_005262.1 + 59062 0.7 0.168527
Target:  5'- aGGUgcaGGaGCGcaucaagaAGCUGACGGGCGUGaaggagcuCGGCa -3'
miRNA:   3'- -CCG---CC-CGC--------UCGACUGCCCGCGC--------GCCG- -5'
24105 3' -64.8 NC_005262.1 + 29914 0.7 0.168952
Target:  5'- gGGCGaugcgaccacgcucGGCGAuaGCUGaaggacgacccggacGCGGGCG-GCGGCg -3'
miRNA:   3'- -CCGC--------------CCGCU--CGAC---------------UGCCCGCgCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 53767 0.7 0.181676
Target:  5'- aGGaGGGCGGGCUGuACGucGGCGauacCGGCa -3'
miRNA:   3'- -CCgCCCGCUCGAC-UGC--CCGCgc--GCCG- -5'
24105 3' -64.8 NC_005262.1 + 52742 0.7 0.177195
Target:  5'- gGGCucaGGCGAcGCUG-CGGccuguugcuGCGCGCGGUc -3'
miRNA:   3'- -CCGc--CCGCU-CGACuGCC---------CGCGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 58639 0.7 0.168527
Target:  5'- cGGCaGuCGAGCgGcCGGGCGCGCGaGUu -3'
miRNA:   3'- -CCGcCcGCUCGaCuGCCCGCGCGC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.