Results 101 - 108 of 108 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
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P value |
| Predicted miRNA align pattern | |||||||
| 24105 | 3' | -64.8 | NC_005262.1 | + | 17570 | 0.77 | 0.048763 |
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Target: 5'- cGGCGGcGCGcgaagccgaggagaAGCUGGCGGcgcaGCGCGCGGa -3' miRNA: 3'- -CCGCC-CGC--------------UCGACUGCC----CGCGCGCCg -5' |
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| 24105 | 3' | -64.8 | NC_005262.1 | + | 46902 | 0.77 | 0.057756 |
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Target: 5'- uGCGGGCGGuGCggUGugGugcggcccGGCGCGCGGCc -3' miRNA: 3'- cCGCCCGCU-CG--ACugC--------CCGCGCGCCG- -5' |
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| 24105 | 3' | -64.8 | NC_005262.1 | + | 13460 | 0.78 | 0.042957 |
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Target: 5'- cGCGGGCGcuucguccuGCgcGGCGGGCGCuGCGGCc -3' miRNA: 3'- cCGCCCGCu--------CGa-CUGCCCGCG-CGCCG- -5' |
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| 24105 | 3' | -64.8 | NC_005262.1 | + | 13229 | 0.78 | 0.042842 |
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Target: 5'- aGCGGGCucGGGCUGcgguugaACGGGUGCGCGaGCc -3' miRNA: 3'- cCGCCCG--CUCGAC-------UGCCCGCGCGC-CG- -5' |
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| 24105 | 3' | -64.8 | NC_005262.1 | + | 33924 | 0.82 | 0.021188 |
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Target: 5'- cGGCGGuGcCGAGCUcgcGGCGGGCaCGCGGCa -3' miRNA: 3'- -CCGCC-C-GCUCGA---CUGCCCGcGCGCCG- -5' |
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| 24105 | 3' | -64.8 | NC_005262.1 | + | 56959 | 0.83 | 0.017025 |
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Target: 5'- cGCGGGCGAGUUcGCGGGCGUGguCGGCa -3' miRNA: 3'- cCGCCCGCUCGAcUGCCCGCGC--GCCG- -5' |
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| 24105 | 3' | -64.8 | NC_005262.1 | + | 34126 | 0.87 | 0.008812 |
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Target: 5'- gGGuUGGGCGGGCUGcGCGGGCGCggGCGGCa -3' miRNA: 3'- -CC-GCCCGCUCGAC-UGCCCGCG--CGCCG- -5' |
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| 24105 | 3' | -64.8 | NC_005262.1 | + | 61166 | 1.13 | 0.000093 |
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Target: 5'- cGGCGGGCGAGCUGACGGGCGCGCGGCg -3' miRNA: 3'- -CCGCCCGCUCGACUGCCCGCGCGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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