miRNA display CGI


Results 21 - 40 of 108 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24105 3' -64.8 NC_005262.1 + 60684 0.72 0.134066
Target:  5'- uGCuGGCGAcGCUGggcuucuucGCGGGCGCGuCGGg -3'
miRNA:   3'- cCGcCCGCU-CGAC---------UGCCCGCGC-GCCg -5'
24105 3' -64.8 NC_005262.1 + 23838 0.72 0.134066
Target:  5'- gGGCGccGGCGAGCgcaagGAgagaGGGaggaauccCGCGCGGCg -3'
miRNA:   3'- -CCGC--CCGCUCGa----CUg---CCC--------GCGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 15740 0.71 0.144396
Target:  5'- cGGCaGGuGCGAccgacgcGCUuGCGGGCGCGgcCGGCu -3'
miRNA:   3'- -CCG-CC-CGCU-------CGAcUGCCCGCGC--GCCG- -5'
24105 3' -64.8 NC_005262.1 + 5078 0.71 0.137197
Target:  5'- cGGCGGcGCGugcgaccGGCUcGGCGGuGCGCGCccGGUu -3'
miRNA:   3'- -CCGCC-CGC-------UCGA-CUGCC-CGCGCG--CCG- -5'
24105 3' -64.8 NC_005262.1 + 40721 0.71 0.141114
Target:  5'- cGGCGGcGCugacgcccucGAGC--ACGGGCG-GCGGCg -3'
miRNA:   3'- -CCGCC-CG----------CUCGacUGCCCGCgCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 14023 0.7 0.164337
Target:  5'- cGGCGcGGCagcggccgGAGCcu-CGGGCGCG-GGCg -3'
miRNA:   3'- -CCGC-CCG--------CUCGacuGCCCGCGCgCCG- -5'
24105 3' -64.8 NC_005262.1 + 52742 0.7 0.177195
Target:  5'- gGGCucaGGCGAcGCUG-CGGccuguugcuGCGCGCGGUc -3'
miRNA:   3'- -CCGc--CCGCU-CGACuGCC---------CGCGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 43835 0.7 0.164337
Target:  5'- cGCGGGCcGGCcgcgcgcGGCGGuGCGC-CGGCa -3'
miRNA:   3'- cCGCCCGcUCGa------CUGCC-CGCGcGCCG- -5'
24105 3' -64.8 NC_005262.1 + 29914 0.7 0.168952
Target:  5'- gGGCGaugcgaccacgcucGGCGAuaGCUGaaggacgacccggacGCGGGCG-GCGGCg -3'
miRNA:   3'- -CCGC--------------CCGCU--CGAC---------------UGCCCGCgCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 49154 0.7 0.168104
Target:  5'- cGGUGGGCGuGCaGGCcgcaucggccgcaGcGGCGCGCacGGCg -3'
miRNA:   3'- -CCGCCCGCuCGaCUG-------------C-CCGCGCG--CCG- -5'
24105 3' -64.8 NC_005262.1 + 53767 0.7 0.181676
Target:  5'- aGGaGGGCGGGCUGuACGucGGCGauacCGGCa -3'
miRNA:   3'- -CCgCCCGCUCGAC-UGC--CCGCgc--GCCG- -5'
24105 3' -64.8 NC_005262.1 + 59062 0.7 0.168527
Target:  5'- aGGUgcaGGaGCGcaucaagaAGCUGACGGGCGUGaaggagcuCGGCa -3'
miRNA:   3'- -CCG---CC-CGC--------UCGACUGCCCGCGC--------GCCG- -5'
24105 3' -64.8 NC_005262.1 + 58639 0.7 0.168527
Target:  5'- cGGCaGuCGAGCgGcCGGGCGCGCGaGUu -3'
miRNA:   3'- -CCGcCcGCUCGaCuGCCCGCGCGC-CG- -5'
24105 3' -64.8 NC_005262.1 + 19079 0.7 0.168527
Target:  5'- cGCGGcCGAGCUGcAUuuccucGCGCGCGGCg -3'
miRNA:   3'- cCGCCcGCUCGAC-UGcc----CGCGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 21801 0.7 0.16684
Target:  5'- aGGCGGGCGuucgucgcguucuGCgcGGCGGuGUcaggcaacagGCGCGGCa -3'
miRNA:   3'- -CCGCCCGCu------------CGa-CUGCC-CG----------CGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 50740 0.69 0.207638
Target:  5'- aGGCcGGCGAgacgcacgagaucguGCaGACGGGCaagGUGCGGUu -3'
miRNA:   3'- -CCGcCCGCU---------------CGaCUGCCCG---CGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 15574 0.69 0.215924
Target:  5'- aGCaGGagGAGCUGGa-GGCGCGCGcGCg -3'
miRNA:   3'- cCGcCCg-CUCGACUgcCCGCGCGC-CG- -5'
24105 3' -64.8 NC_005262.1 + 3725 0.69 0.215924
Target:  5'- aGCuGGGCcuGCgccugGAUGGGUuccGCGCGGCu -3'
miRNA:   3'- cCG-CCCGcuCGa----CUGCCCG---CGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 60639 0.69 0.215924
Target:  5'- uGGCGagcGGCGAGCaccGCGGGCaagcacucaucGCGCucGGCa -3'
miRNA:   3'- -CCGC---CCGCUCGac-UGCCCG-----------CGCG--CCG- -5'
24105 3' -64.8 NC_005262.1 + 17213 0.69 0.189523
Target:  5'- cGGCGaGGaCGGcGCUGGCgucguggucgucguGGGCGuCGCGGg -3'
miRNA:   3'- -CCGC-CC-GCU-CGACUG--------------CCCGC-GCGCCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.