miRNA display CGI


Results 41 - 60 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24105 3' -64.8 NC_005262.1 + 12806 0.69 0.200614
Target:  5'- gGGCGGcGCGcAGCcGGCGcgugaagaaGGaGCGCGGCc -3'
miRNA:   3'- -CCGCC-CGC-UCGaCUGC---------CCgCGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 17394 0.69 0.205609
Target:  5'- uGCGGGCccAGCccGACGaGGCGCGCcuguucGGCc -3'
miRNA:   3'- cCGCCCGc-UCGa-CUGC-CCGCGCG------CCG- -5'
24105 3' -64.8 NC_005262.1 + 50740 0.69 0.207638
Target:  5'- aGGCcGGCGAgacgcacgagaucguGCaGACGGGCaagGUGCGGUu -3'
miRNA:   3'- -CCGcCCGCU---------------CGaCUGCCCG---CGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 60639 0.69 0.215924
Target:  5'- uGGCGagcGGCGAGCaccGCGGGCaagcacucaucGCGCucGGCa -3'
miRNA:   3'- -CCGC---CCGCUCGac-UGCCCG-----------CGCG--CCG- -5'
24105 3' -64.8 NC_005262.1 + 15574 0.69 0.215924
Target:  5'- aGCaGGagGAGCUGGa-GGCGCGCGcGCg -3'
miRNA:   3'- cCGcCCg-CUCGACUgcCCGCGCGC-CG- -5'
24105 3' -64.8 NC_005262.1 + 3725 0.69 0.215924
Target:  5'- aGCuGGGCcuGCgccugGAUGGGUuccGCGCGGCu -3'
miRNA:   3'- cCG-CCCGcuCGa----CUGCCCG---CGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 50273 0.68 0.221246
Target:  5'- gGGCGcgcccgcgccGGcCGAGCccgUGACGGcCGCGCGGa -3'
miRNA:   3'- -CCGC----------CC-GCUCG---ACUGCCcGCGCGCCg -5'
24105 3' -64.8 NC_005262.1 + 36768 0.68 0.221246
Target:  5'- uGGCgGGGCGGGCUGcuuCGaucauGGUcauuccuccaGUGCGGCg -3'
miRNA:   3'- -CCG-CCCGCUCGACu--GC-----CCG----------CGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 41560 0.68 0.221246
Target:  5'- aGGCcGGCcGGCg--UGGGCgGCGCGGCc -3'
miRNA:   3'- -CCGcCCGcUCGacuGCCCG-CGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 36240 0.68 0.221246
Target:  5'- uGCGcGGCGuccucgccggGGCUGAgcucgcccucguCGGuGCGCGCGGg -3'
miRNA:   3'- cCGC-CCGC----------UCGACU------------GCC-CGCGCGCCg -5'
24105 3' -64.8 NC_005262.1 + 52360 0.68 0.221784
Target:  5'- cGCGGGCGcGGCgugucgcgcaccuucGGCGGcccgGCGCGGCg -3'
miRNA:   3'- cCGCCCGC-UCGa--------------CUGCCcg--CGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 63655 0.68 0.226679
Target:  5'- uGCGGGCGAaCUGGCuGGaauugccgGCGaCGGCg -3'
miRNA:   3'- cCGCCCGCUcGACUGcCCg-------CGC-GCCG- -5'
24105 3' -64.8 NC_005262.1 + 60555 0.68 0.226679
Target:  5'- --aGGGCacGCUGACGccGGCGCuCGGCg -3'
miRNA:   3'- ccgCCCGcuCGACUGC--CCGCGcGCCG- -5'
24105 3' -64.8 NC_005262.1 + 12564 0.68 0.232225
Target:  5'- cGGCGGcGCucgucGAGCUGcugcugccgccgGCGaGGCGuCGCGGa -3'
miRNA:   3'- -CCGCC-CG-----CUCGAC------------UGC-CCGC-GCGCCg -5'
24105 3' -64.8 NC_005262.1 + 13710 0.68 0.237884
Target:  5'- cGCGGcGCGGGUUcGGucGGCGCaGCGGCc -3'
miRNA:   3'- cCGCC-CGCUCGA-CUgcCCGCG-CGCCG- -5'
24105 3' -64.8 NC_005262.1 + 35164 0.68 0.243076
Target:  5'- -cCGGGCGAcGCUGGCGGcaauGaggucacgaccgcCGCGUGGCc -3'
miRNA:   3'- ccGCCCGCU-CGACUGCC----C-------------GCGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 46151 0.68 0.243076
Target:  5'- uGGCGGGCGAucucugccuGCUGcuCGGcgagcucGCGCuGCuGGCg -3'
miRNA:   3'- -CCGCCCGCU---------CGACu-GCC-------CGCG-CG-CCG- -5'
24105 3' -64.8 NC_005262.1 + 1143 0.68 0.243659
Target:  5'- uGCGGGCuucGAuGCUGccgcGCGGGCuugccauccuGCGCGGa -3'
miRNA:   3'- cCGCCCG---CU-CGAC----UGCCCG----------CGCGCCg -5'
24105 3' -64.8 NC_005262.1 + 46697 0.68 0.249549
Target:  5'- cGGUGGaccuccucGCGGcccgccGCgucGACGGGCGCGCcuaucGGCg -3'
miRNA:   3'- -CCGCC--------CGCU------CGa--CUGCCCGCGCG-----CCG- -5'
24105 3' -64.8 NC_005262.1 + 39939 0.68 0.249549
Target:  5'- cGGaCGGGCGgcaccGGCaagGGCGGcGUGC-CGGCc -3'
miRNA:   3'- -CC-GCCCGC-----UCGa--CUGCC-CGCGcGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.