Results 81 - 100 of 108 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24105 | 3' | -64.8 | NC_005262.1 | + | 33638 | 0.66 | 0.300961 |
Target: 5'- cGGCGcaGGUGuccgaGGCUGACGaGCGCGCcucGCu -3' miRNA: 3'- -CCGC--CCGC-----UCGACUGCcCGCGCGc--CG- -5' |
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24105 | 3' | -64.8 | NC_005262.1 | + | 16083 | 0.66 | 0.300961 |
Target: 5'- aGGC-GGCGAGCcgccgcccGGCGcGGUGCuuGGCg -3' miRNA: 3'- -CCGcCCGCUCGa-------CUGC-CCGCGcgCCG- -5' |
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24105 | 3' | -64.8 | NC_005262.1 | + | 22708 | 0.66 | 0.300961 |
Target: 5'- uGGCcGGCGGcGUUGACGaGCGUGcCGGg -3' miRNA: 3'- -CCGcCCGCU-CGACUGCcCGCGC-GCCg -5' |
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24105 | 3' | -64.8 | NC_005262.1 | + | 60352 | 0.66 | 0.300961 |
Target: 5'- gGGCGGuuCGAGCUGAucccCGaGCGCgcugaagcgauGCGGCu -3' miRNA: 3'- -CCGCCc-GCUCGACU----GCcCGCG-----------CGCCG- -5' |
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24105 | 3' | -64.8 | NC_005262.1 | + | 30438 | 0.66 | 0.300961 |
Target: 5'- cGGCcGGCGGGUUGucgaucggcggcACGGuGcCGCGCaGCg -3' miRNA: 3'- -CCGcCCGCUCGAC------------UGCC-C-GCGCGcCG- -5' |
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24105 | 3' | -64.8 | NC_005262.1 | + | 49686 | 0.66 | 0.306529 |
Target: 5'- cGGCGGcGCGcGCaaccugaaccgcGACGGcGUGCcggGCGGCg -3' miRNA: 3'- -CCGCC-CGCuCGa-----------CUGCC-CGCG---CGCCG- -5' |
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24105 | 3' | -64.8 | NC_005262.1 | + | 35645 | 0.66 | 0.307934 |
Target: 5'- cGGCGGGCGAuggGCUacuCGGuGC-CGCaGCu -3' miRNA: 3'- -CCGCCCGCU---CGAcu-GCC-CGcGCGcCG- -5' |
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24105 | 3' | -64.8 | NC_005262.1 | + | 7524 | 0.66 | 0.315029 |
Target: 5'- -uCGGGCaGGUUcGGC-GGCGCGuCGGCg -3' miRNA: 3'- ccGCCCGcUCGA-CUGcCCGCGC-GCCG- -5' |
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24105 | 3' | -64.8 | NC_005262.1 | + | 58563 | 0.66 | 0.315029 |
Target: 5'- aGGC-GGCGAgaaGCUGAUcGGCaCGcCGGCa -3' miRNA: 3'- -CCGcCCGCU---CGACUGcCCGcGC-GCCG- -5' |
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24105 | 3' | -64.8 | NC_005262.1 | + | 34950 | 0.66 | 0.315029 |
Target: 5'- cGGC-GGCaAGUUcGACGcGGCGCuCGGCc -3' miRNA: 3'- -CCGcCCGcUCGA-CUGC-CCGCGcGCCG- -5' |
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24105 | 3' | -64.8 | NC_005262.1 | + | 34981 | 0.66 | 0.315029 |
Target: 5'- cGCGacGCGAGCUcgagaugcGCGGGCGCGaGGUc -3' miRNA: 3'- cCGCc-CGCUCGAc-------UGCCCGCGCgCCG- -5' |
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24105 | 3' | -64.8 | NC_005262.1 | + | 17260 | 0.66 | 0.315029 |
Target: 5'- cGGCGGccggcgccgcGCuGGGCUGcugcgcgggcAgGGGCGuCGCGGUc -3' miRNA: 3'- -CCGCC----------CG-CUCGAC----------UgCCCGC-GCGCCG- -5' |
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24105 | 3' | -64.8 | NC_005262.1 | + | 34852 | 0.66 | 0.322247 |
Target: 5'- cGCGcGCGAGCacaUGACccucaucucgugGGGCGCGCucGCg -3' miRNA: 3'- cCGCcCGCUCG---ACUG------------CCCGCGCGc-CG- -5' |
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24105 | 3' | -64.8 | NC_005262.1 | + | 15500 | 0.66 | 0.322247 |
Target: 5'- cGGCGgcucgcucaccGGCGAGCUGcACaaGGCGaUGUGGUu -3' miRNA: 3'- -CCGC-----------CCGCUCGAC-UGc-CCGC-GCGCCG- -5' |
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24105 | 3' | -64.8 | NC_005262.1 | + | 40544 | 0.66 | 0.328848 |
Target: 5'- cGGCGGGCG-GCUcuuacgcGcCGGGCaacaccgGCGGUg -3' miRNA: 3'- -CCGCCCGCuCGA-------CuGCCCGcg-----CGCCG- -5' |
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24105 | 3' | -64.8 | NC_005262.1 | + | 24786 | 0.66 | 0.329588 |
Target: 5'- -cCGGGCGAGCacuucGACaucgcgaaGGGCaaGCGCGaGCu -3' miRNA: 3'- ccGCCCGCUCGa----CUG--------CCCG--CGCGC-CG- -5' |
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24105 | 3' | -64.8 | NC_005262.1 | + | 45435 | 0.66 | 0.329588 |
Target: 5'- gGGCuuauGGGCGGGCUcGgaaccaucGCcGGCGCG-GGCa -3' miRNA: 3'- -CCG----CCCGCUCGA-C--------UGcCCGCGCgCCG- -5' |
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24105 | 3' | -64.8 | NC_005262.1 | + | 54101 | 0.66 | 0.329588 |
Target: 5'- gGGUuuGGcGCGAGCcuuguucaUGACGGuguuuGCGCaggaGCGGCa -3' miRNA: 3'- -CCG--CC-CGCUCG--------ACUGCC-----CGCG----CGCCG- -5' |
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24105 | 3' | -64.8 | NC_005262.1 | + | 466 | 0.66 | 0.329588 |
Target: 5'- --aGGGCGuugaccucGGC-GACGcGGCGCGCGuGUu -3' miRNA: 3'- ccgCCCGC--------UCGaCUGC-CCGCGCGC-CG- -5' |
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24105 | 3' | -64.8 | NC_005262.1 | + | 13521 | 0.66 | 0.329588 |
Target: 5'- -aCGGGCucGGCcgGcGCGGGCGCgcccucguuGCGGCg -3' miRNA: 3'- ccGCCCGc-UCGa-C-UGCCCGCG---------CGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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