miRNA display CGI


Results 41 - 60 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24105 3' -64.8 NC_005262.1 + 23838 0.72 0.134066
Target:  5'- gGGCGccGGCGAGCgcaagGAgagaGGGaggaauccCGCGCGGCg -3'
miRNA:   3'- -CCGC--CCGCUCGa----CUg---CCC--------GCGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 24136 0.66 0.344637
Target:  5'- uGCGGGUGAcGUucgagGAUGGGCG-GCaggaGGCg -3'
miRNA:   3'- cCGCCCGCU-CGa----CUGCCCGCgCG----CCG- -5'
24105 3' -64.8 NC_005262.1 + 24733 0.67 0.261683
Target:  5'- cGCuGGCGcGCgcGAUcGGCGUGCGGCc -3'
miRNA:   3'- cCGcCCGCuCGa-CUGcCCGCGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 24786 0.66 0.329588
Target:  5'- -cCGGGCGAGCacuucGACaucgcgaaGGGCaaGCGCGaGCu -3'
miRNA:   3'- ccGCCCGCUCGa----CUG--------CCCG--CGCGC-CG- -5'
24105 3' -64.8 NC_005262.1 + 26336 0.67 0.267927
Target:  5'- uGCucGagGAGCUGAugcCGGGCGUGCGGUu -3'
miRNA:   3'- cCGccCg-CUCGACU---GCCCGCGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 29643 0.67 0.267297
Target:  5'- uGCcGGCGAcgGCcGGCGGGUagacguagaagauGCGCGGUg -3'
miRNA:   3'- cCGcCCGCU--CGaCUGCCCG-------------CGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 29914 0.7 0.168952
Target:  5'- gGGCGaugcgaccacgcucGGCGAuaGCUGaaggacgacccggacGCGGGCG-GCGGCg -3'
miRNA:   3'- -CCGC--------------CCGCU--CGAC---------------UGCCCGCgCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 30438 0.66 0.300961
Target:  5'- cGGCcGGCGGGUUGucgaucggcggcACGGuGcCGCGCaGCg -3'
miRNA:   3'- -CCGcCCGCUCGAC------------UGCC-C-GCGCGcCG- -5'
24105 3' -64.8 NC_005262.1 + 30859 0.66 0.337051
Target:  5'- cGGuCGGaGCGAucgugaaggcGCUGGCGaGcGuCGCGCGuGCg -3'
miRNA:   3'- -CC-GCC-CGCU----------CGACUGC-C-C-GCGCGC-CG- -5'
24105 3' -64.8 NC_005262.1 + 33638 0.66 0.300961
Target:  5'- cGGCGcaGGUGuccgaGGCUGACGaGCGCGCcucGCu -3'
miRNA:   3'- -CCGC--CCGC-----UCGACUGCcCGCGCGc--CG- -5'
24105 3' -64.8 NC_005262.1 + 33924 0.82 0.021188
Target:  5'- cGGCGGuGcCGAGCUcgcGGCGGGCaCGCGGCa -3'
miRNA:   3'- -CCGCC-C-GCUCGA---CUGCCCGcGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 33970 0.67 0.285388
Target:  5'- cGCGGcGuCGAGCUgcugGACgucgugcguaacauGGGCGCGgaCGGCg -3'
miRNA:   3'- cCGCC-C-GCUCGA----CUG--------------CCCGCGC--GCCG- -5'
24105 3' -64.8 NC_005262.1 + 34042 0.67 0.294111
Target:  5'- gGGCGguugaGGCGGGUUaGcCGGGaGCGcCGGCu -3'
miRNA:   3'- -CCGC-----CCGCUCGA-CuGCCCgCGC-GCCG- -5'
24105 3' -64.8 NC_005262.1 + 34126 0.87 0.008812
Target:  5'- gGGuUGGGCGGGCUGcGCGGGCGCggGCGGCa -3'
miRNA:   3'- -CC-GCCCGCUCGAC-UGCCCGCG--CGCCG- -5'
24105 3' -64.8 NC_005262.1 + 34852 0.66 0.322247
Target:  5'- cGCGcGCGAGCacaUGACccucaucucgugGGGCGCGCucGCg -3'
miRNA:   3'- cCGCcCGCUCG---ACUG------------CCCGCGCGc-CG- -5'
24105 3' -64.8 NC_005262.1 + 34950 0.66 0.315029
Target:  5'- cGGC-GGCaAGUUcGACGcGGCGCuCGGCc -3'
miRNA:   3'- -CCGcCCGcUCGA-CUGC-CCGCGcGCCG- -5'
24105 3' -64.8 NC_005262.1 + 34981 0.66 0.315029
Target:  5'- cGCGacGCGAGCUcgagaugcGCGGGCGCGaGGUc -3'
miRNA:   3'- cCGCc-CGCUCGAc-------UGCCCGCGCgCCG- -5'
24105 3' -64.8 NC_005262.1 + 35164 0.68 0.243076
Target:  5'- -cCGGGCGAcGCUGGCGGcaauGaggucacgaccgcCGCGUGGCc -3'
miRNA:   3'- ccGCCCGCU-CGACUGCC----C-------------GCGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 35235 0.69 0.195724
Target:  5'- cGGCGGcGCGAucgGCagcGGCuGGGCGCcccCGGCg -3'
miRNA:   3'- -CCGCC-CGCU---CGa--CUG-CCCGCGc--GCCG- -5'
24105 3' -64.8 NC_005262.1 + 35645 0.66 0.307934
Target:  5'- cGGCGGGCGAuggGCUacuCGGuGC-CGCaGCu -3'
miRNA:   3'- -CCGCCCGCU---CGAcu-GCC-CGcGCGcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.