miRNA display CGI


Results 61 - 80 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24105 3' -64.8 NC_005262.1 + 36240 0.68 0.221246
Target:  5'- uGCGcGGCGuccucgccggGGCUGAgcucgcccucguCGGuGCGCGCGGg -3'
miRNA:   3'- cCGC-CCGC----------UCGACU------------GCC-CGCGCGCCg -5'
24105 3' -64.8 NC_005262.1 + 36533 0.67 0.267927
Target:  5'- cGGCGcGGCGA-CUGGgauuauCGGGCGCacgauccucGCGGa -3'
miRNA:   3'- -CCGC-CCGCUcGACU------GCCCGCG---------CGCCg -5'
24105 3' -64.8 NC_005262.1 + 36768 0.68 0.221246
Target:  5'- uGGCgGGGCGGGCUGcuuCGaucauGGUcauuccuccaGUGCGGCg -3'
miRNA:   3'- -CCG-CCCGCUCGACu--GC-----CCG----------CGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 37158 0.69 0.195724
Target:  5'- aGGCGGuGCGccAGCUacGCGGGCGCuucgauuugcccGCGGg -3'
miRNA:   3'- -CCGCC-CGC--UCGAc-UGCCCGCG------------CGCCg -5'
24105 3' -64.8 NC_005262.1 + 37906 0.68 0.255557
Target:  5'- uGGUGGcGCGGGCUauaucgcgugGACGauuGGCGCGCa-- -3'
miRNA:   3'- -CCGCC-CGCUCGA----------CUGC---CCGCGCGccg -5'
24105 3' -64.8 NC_005262.1 + 38545 0.73 0.100791
Target:  5'- aGGCGGcGCagGAGCcGGCGuuGCGCGCGGUu -3'
miRNA:   3'- -CCGCC-CG--CUCGaCUGCc-CGCGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 39939 0.68 0.249549
Target:  5'- cGGaCGGGCGgcaccGGCaagGGCGGcGUGC-CGGCc -3'
miRNA:   3'- -CC-GCCCGC-----UCGa--CUGCC-CGCGcGCCG- -5'
24105 3' -64.8 NC_005262.1 + 40247 0.68 0.255557
Target:  5'- cGGCGGGCG-GUUGGucaGucUGCGCGGUc -3'
miRNA:   3'- -CCGCCCGCuCGACUg--CccGCGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 40544 0.66 0.328848
Target:  5'- cGGCGGGCG-GCUcuuacgcGcCGGGCaacaccgGCGGUg -3'
miRNA:   3'- -CCGCCCGCuCGA-------CuGCCCGcg-----CGCCG- -5'
24105 3' -64.8 NC_005262.1 + 40721 0.71 0.141114
Target:  5'- cGGCGGcGCugacgcccucGAGC--ACGGGCG-GCGGCg -3'
miRNA:   3'- -CCGCC-CG----------CUCGacUGCCCGCgCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 41560 0.68 0.221246
Target:  5'- aGGCcGGCcGGCg--UGGGCgGCGCGGCc -3'
miRNA:   3'- -CCGcCCGcUCGacuGCCCG-CGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 43387 0.67 0.274292
Target:  5'- cGGCGauGCGAGCaucGGCGGcgaGCucaacgGCGCGGCg -3'
miRNA:   3'- -CCGCc-CGCUCGa--CUGCC---CG------CGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 43663 0.67 0.286052
Target:  5'- uGGCacguGGCGAcCUGAacgcaagccaagcCGGGCcgaauucGCGCGGCg -3'
miRNA:   3'- -CCGc---CCGCUcGACU-------------GCCCG-------CGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 43835 0.7 0.164337
Target:  5'- cGCGGGCcGGCcgcgcgcGGCGGuGCGC-CGGCa -3'
miRNA:   3'- cCGCCCGcUCGa------CUGCC-CGCGcGCCG- -5'
24105 3' -64.8 NC_005262.1 + 44147 0.66 0.337051
Target:  5'- cGGcCGGacGCGcGCgcGAuCGGGCaggaGCGCGGCg -3'
miRNA:   3'- -CC-GCC--CGCuCGa-CU-GCCCG----CGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 45435 0.66 0.329588
Target:  5'- gGGCuuauGGGCGGGCUcGgaaccaucGCcGGCGCG-GGCa -3'
miRNA:   3'- -CCG----CCCGCUCGA-C--------UGcCCGCGCgCCG- -5'
24105 3' -64.8 NC_005262.1 + 46151 0.68 0.243076
Target:  5'- uGGCGGGCGAucucugccuGCUGcuCGGcgagcucGCGCuGCuGGCg -3'
miRNA:   3'- -CCGCCCGCU---------CGACu-GCC-------CGCG-CG-CCG- -5'
24105 3' -64.8 NC_005262.1 + 46697 0.68 0.249549
Target:  5'- cGGUGGaccuccucGCGGcccgccGCgucGACGGGCGCGCcuaucGGCg -3'
miRNA:   3'- -CCGCC--------CGCU------CGa--CUGCCCGCGCG-----CCG- -5'
24105 3' -64.8 NC_005262.1 + 46902 0.77 0.057756
Target:  5'- uGCGGGCGGuGCggUGugGugcggcccGGCGCGCGGCc -3'
miRNA:   3'- cCGCCCGCU-CG--ACugC--------CCGCGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 48468 0.67 0.266669
Target:  5'- cGCGGaucGCGAGCcgcgugggcacgGGC-GGCGCGaCGGCa -3'
miRNA:   3'- cCGCC---CGCUCGa-----------CUGcCCGCGC-GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.