miRNA display CGI


Results 81 - 100 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24105 3' -64.8 NC_005262.1 + 49154 0.7 0.168104
Target:  5'- cGGUGGGCGuGCaGGCcgcaucggccgcaGcGGCGCGCacGGCg -3'
miRNA:   3'- -CCGCCCGCuCGaCUG-------------C-CCGCGCG--CCG- -5'
24105 3' -64.8 NC_005262.1 + 49686 0.66 0.306529
Target:  5'- cGGCGGcGCGcGCaaccugaaccgcGACGGcGUGCcggGCGGCg -3'
miRNA:   3'- -CCGCC-CGCuCGa-----------CUGCC-CGCG---CGCCG- -5'
24105 3' -64.8 NC_005262.1 + 50273 0.68 0.221246
Target:  5'- gGGCGcgcccgcgccGGcCGAGCccgUGACGGcCGCGCGGa -3'
miRNA:   3'- -CCGC----------CC-GCUCG---ACUGCCcGCGCGCCg -5'
24105 3' -64.8 NC_005262.1 + 50740 0.69 0.207638
Target:  5'- aGGCcGGCGAgacgcacgagaucguGCaGACGGGCaagGUGCGGUu -3'
miRNA:   3'- -CCGcCCGCU---------------CGaCUGCCCG---CGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 51214 0.75 0.075415
Target:  5'- cGCGGGCGAuGCUGAucgcacCGGGCuccucaugcGCGcCGGCu -3'
miRNA:   3'- cCGCCCGCU-CGACU------GCCCG---------CGC-GCCG- -5'
24105 3' -64.8 NC_005262.1 + 52360 0.68 0.221784
Target:  5'- cGCGGGCGcGGCgugucgcgcaccuucGGCGGcccgGCGCGGCg -3'
miRNA:   3'- cCGCCCGC-UCGa--------------CUGCCcg--CGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 52612 0.76 0.066018
Target:  5'- -cCGGGCGAGCUGAagcgcaccggcuCGuGGCGCGCGaccGCa -3'
miRNA:   3'- ccGCCCGCUCGACU------------GC-CCGCGCGC---CG- -5'
24105 3' -64.8 NC_005262.1 + 52742 0.7 0.177195
Target:  5'- gGGCucaGGCGAcGCUG-CGGccuguugcuGCGCGCGGUc -3'
miRNA:   3'- -CCGc--CCGCU-CGACuGCC---------CGCGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 53767 0.7 0.181676
Target:  5'- aGGaGGGCGGGCUGuACGucGGCGauacCGGCa -3'
miRNA:   3'- -CCgCCCGCUCGAC-UGC--CCGCgc--GCCG- -5'
24105 3' -64.8 NC_005262.1 + 53819 0.74 0.090745
Target:  5'- cGGCacGGGCaucGAGCUGACGcaccggcgcGGCGCGgaCGGCa -3'
miRNA:   3'- -CCG--CCCG---CUCGACUGC---------CCGCGC--GCCG- -5'
24105 3' -64.8 NC_005262.1 + 54101 0.66 0.329588
Target:  5'- gGGUuuGGcGCGAGCcuuguucaUGACGGuguuuGCGCaggaGCGGCa -3'
miRNA:   3'- -CCG--CC-CGCUCG--------ACUGCC-----CGCG----CGCCG- -5'
24105 3' -64.8 NC_005262.1 + 56959 0.83 0.017025
Target:  5'- cGCGGGCGAGUUcGCGGGCGUGguCGGCa -3'
miRNA:   3'- cCGCCCGCUCGAcUGCCCGCGC--GCCG- -5'
24105 3' -64.8 NC_005262.1 + 57518 0.73 0.101851
Target:  5'- cGGCGaaGGcCGAGCUGcugaccaucaucgagGCGGcaaagaccguGCGCGCGGCg -3'
miRNA:   3'- -CCGC--CC-GCUCGAC---------------UGCC----------CGCGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 58563 0.66 0.315029
Target:  5'- aGGC-GGCGAgaaGCUGAUcGGCaCGcCGGCa -3'
miRNA:   3'- -CCGcCCGCU---CGACUGcCCGcGC-GCCG- -5'
24105 3' -64.8 NC_005262.1 + 58639 0.7 0.168527
Target:  5'- cGGCaGuCGAGCgGcCGGGCGCGCGaGUu -3'
miRNA:   3'- -CCGcCcGCUCGaCuGCCCGCGCGC-CG- -5'
24105 3' -64.8 NC_005262.1 + 59062 0.7 0.168527
Target:  5'- aGGUgcaGGaGCGcaucaagaAGCUGACGGGCGUGaaggagcuCGGCa -3'
miRNA:   3'- -CCG---CC-CGC--------UCGACUGCCCGCGC--------GCCG- -5'
24105 3' -64.8 NC_005262.1 + 60352 0.66 0.300961
Target:  5'- gGGCGGuuCGAGCUGAucccCGaGCGCgcugaagcgauGCGGCu -3'
miRNA:   3'- -CCGCCc-GCUCGACU----GCcCGCG-----------CGCCG- -5'
24105 3' -64.8 NC_005262.1 + 60492 0.75 0.081655
Target:  5'- --aGGGCGAGacgcCGGGcCGCGCGGCg -3'
miRNA:   3'- ccgCCCGCUCgacuGCCC-GCGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 60555 0.68 0.226679
Target:  5'- --aGGGCacGCUGACGccGGCGCuCGGCg -3'
miRNA:   3'- ccgCCCGcuCGACUGC--CCGCGcGCCG- -5'
24105 3' -64.8 NC_005262.1 + 60639 0.69 0.215924
Target:  5'- uGGCGagcGGCGAGCaccGCGGGCaagcacucaucGCGCucGGCa -3'
miRNA:   3'- -CCGC---CCGCUCGac-UGCCCG-----------CGCG--CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.