Results 101 - 108 of 108 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 24105 | 3' | -64.8 | NC_005262.1 | + | 60684 | 0.72 | 0.134066 |
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Target: 5'- uGCuGGCGAcGCUGggcuucuucGCGGGCGCGuCGGg -3' miRNA: 3'- cCGcCCGCU-CGAC---------UGCCCGCGC-GCCg -5' |
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| 24105 | 3' | -64.8 | NC_005262.1 | + | 61166 | 1.13 | 0.000093 |
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Target: 5'- cGGCGGGCGAGCUGACGGGCGCGCGGCg -3' miRNA: 3'- -CCGCCCGCUCGACUGCCCGCGCGCCG- -5' |
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| 24105 | 3' | -64.8 | NC_005262.1 | + | 61460 | 0.66 | 0.337051 |
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Target: 5'- cGGCGGacgGCGAagcGCUaGACGacaucuuCGCGCGGCc -3' miRNA: 3'- -CCGCC---CGCU---CGA-CUGCcc-----GCGCGCCG- -5' |
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| 24105 | 3' | -64.8 | NC_005262.1 | + | 61643 | 0.66 | 0.337051 |
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Target: 5'- --aGGGCGAGgaGGaagugcuguacCGcGGCGCGCuggaGGCg -3' miRNA: 3'- ccgCCCGCUCgaCU-----------GC-CCGCGCG----CCG- -5' |
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| 24105 | 3' | -64.8 | NC_005262.1 | + | 62319 | 0.68 | 0.255557 |
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Target: 5'- aGCGGcaGCGccGGCaGACGaGCGgGCGGCg -3' miRNA: 3'- cCGCC--CGC--UCGaCUGCcCGCgCGCCG- -5' |
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| 24105 | 3' | -64.8 | NC_005262.1 | + | 62511 | 0.66 | 0.337051 |
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Target: 5'- cGGgGGGCGuccuGCUGGCGaaaaucgccGGCcuuuGgGCGGUu -3' miRNA: 3'- -CCgCCCGCu---CGACUGC---------CCG----CgCGCCG- -5' |
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| 24105 | 3' | -64.8 | NC_005262.1 | + | 63075 | 0.74 | 0.083843 |
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Target: 5'- cGCGGGCGAGUaugcGGCGGcGUGCaaGGCg -3' miRNA: 3'- cCGCCCGCUCGa---CUGCC-CGCGcgCCG- -5' |
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| 24105 | 3' | -64.8 | NC_005262.1 | + | 63655 | 0.68 | 0.226679 |
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Target: 5'- uGCGGGCGAaCUGGCuGGaauugccgGCGaCGGCg -3' miRNA: 3'- cCGCCCGCUcGACUGcCCg-------CGC-GCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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