miRNA display CGI


Results 21 - 40 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24105 3' -64.8 NC_005262.1 + 52742 0.7 0.177195
Target:  5'- gGGCucaGGCGAcGCUG-CGGccuguugcuGCGCGCGGUc -3'
miRNA:   3'- -CCGc--CCGCU-CGACuGCC---------CGCGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 52612 0.76 0.066018
Target:  5'- -cCGGGCGAGCUGAagcgcaccggcuCGuGGCGCGCGaccGCa -3'
miRNA:   3'- ccGCCCGCUCGACU------------GC-CCGCGCGC---CG- -5'
24105 3' -64.8 NC_005262.1 + 52360 0.68 0.221784
Target:  5'- cGCGGGCGcGGCgugucgcgcaccuucGGCGGcccgGCGCGGCg -3'
miRNA:   3'- cCGCCCGC-UCGa--------------CUGCCcg--CGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 51214 0.75 0.075415
Target:  5'- cGCGGGCGAuGCUGAucgcacCGGGCuccucaugcGCGcCGGCu -3'
miRNA:   3'- cCGCCCGCU-CGACU------GCCCG---------CGC-GCCG- -5'
24105 3' -64.8 NC_005262.1 + 50740 0.69 0.207638
Target:  5'- aGGCcGGCGAgacgcacgagaucguGCaGACGGGCaagGUGCGGUu -3'
miRNA:   3'- -CCGcCCGCU---------------CGaCUGCCCG---CGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 50273 0.68 0.221246
Target:  5'- gGGCGcgcccgcgccGGcCGAGCccgUGACGGcCGCGCGGa -3'
miRNA:   3'- -CCGC----------CC-GCUCG---ACUGCCcGCGCGCCg -5'
24105 3' -64.8 NC_005262.1 + 49686 0.66 0.306529
Target:  5'- cGGCGGcGCGcGCaaccugaaccgcGACGGcGUGCcggGCGGCg -3'
miRNA:   3'- -CCGCC-CGCuCGa-----------CUGCC-CGCG---CGCCG- -5'
24105 3' -64.8 NC_005262.1 + 49154 0.7 0.168104
Target:  5'- cGGUGGGCGuGCaGGCcgcaucggccgcaGcGGCGCGCacGGCg -3'
miRNA:   3'- -CCGCCCGCuCGaCUG-------------C-CCGCGCG--CCG- -5'
24105 3' -64.8 NC_005262.1 + 48468 0.67 0.266669
Target:  5'- cGCGGaucGCGAGCcgcgugggcacgGGC-GGCGCGaCGGCa -3'
miRNA:   3'- cCGCC---CGCUCGa-----------CUGcCCGCGC-GCCG- -5'
24105 3' -64.8 NC_005262.1 + 46902 0.77 0.057756
Target:  5'- uGCGGGCGGuGCggUGugGugcggcccGGCGCGCGGCc -3'
miRNA:   3'- cCGCCCGCU-CG--ACugC--------CCGCGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 46697 0.68 0.249549
Target:  5'- cGGUGGaccuccucGCGGcccgccGCgucGACGGGCGCGCcuaucGGCg -3'
miRNA:   3'- -CCGCC--------CGCU------CGa--CUGCCCGCGCG-----CCG- -5'
24105 3' -64.8 NC_005262.1 + 46151 0.68 0.243076
Target:  5'- uGGCGGGCGAucucugccuGCUGcuCGGcgagcucGCGCuGCuGGCg -3'
miRNA:   3'- -CCGCCCGCU---------CGACu-GCC-------CGCG-CG-CCG- -5'
24105 3' -64.8 NC_005262.1 + 45435 0.66 0.329588
Target:  5'- gGGCuuauGGGCGGGCUcGgaaccaucGCcGGCGCG-GGCa -3'
miRNA:   3'- -CCG----CCCGCUCGA-C--------UGcCCGCGCgCCG- -5'
24105 3' -64.8 NC_005262.1 + 44147 0.66 0.337051
Target:  5'- cGGcCGGacGCGcGCgcGAuCGGGCaggaGCGCGGCg -3'
miRNA:   3'- -CC-GCC--CGCuCGa-CU-GCCCG----CGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 43835 0.7 0.164337
Target:  5'- cGCGGGCcGGCcgcgcgcGGCGGuGCGC-CGGCa -3'
miRNA:   3'- cCGCCCGcUCGa------CUGCC-CGCGcGCCG- -5'
24105 3' -64.8 NC_005262.1 + 43663 0.67 0.286052
Target:  5'- uGGCacguGGCGAcCUGAacgcaagccaagcCGGGCcgaauucGCGCGGCg -3'
miRNA:   3'- -CCGc---CCGCUcGACU-------------GCCCG-------CGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 43387 0.67 0.274292
Target:  5'- cGGCGauGCGAGCaucGGCGGcgaGCucaacgGCGCGGCg -3'
miRNA:   3'- -CCGCc-CGCUCGa--CUGCC---CG------CGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 41560 0.68 0.221246
Target:  5'- aGGCcGGCcGGCg--UGGGCgGCGCGGCc -3'
miRNA:   3'- -CCGcCCGcUCGacuGCCCG-CGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 40721 0.71 0.141114
Target:  5'- cGGCGGcGCugacgcccucGAGC--ACGGGCG-GCGGCg -3'
miRNA:   3'- -CCGCC-CG----------CUCGacUGCCCGCgCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 40544 0.66 0.328848
Target:  5'- cGGCGGGCG-GCUcuuacgcGcCGGGCaacaccgGCGGUg -3'
miRNA:   3'- -CCGCCCGCuCGA-------CuGCCCGcg-----CGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.