miRNA display CGI


Results 81 - 100 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24105 3' -64.8 NC_005262.1 + 16083 0.66 0.300961
Target:  5'- aGGC-GGCGAGCcgccgcccGGCGcGGUGCuuGGCg -3'
miRNA:   3'- -CCGcCCGCUCGa-------CUGC-CCGCGcgCCG- -5'
24105 3' -64.8 NC_005262.1 + 15740 0.71 0.144396
Target:  5'- cGGCaGGuGCGAccgacgcGCUuGCGGGCGCGgcCGGCu -3'
miRNA:   3'- -CCG-CC-CGCU-------CGAcUGCCCGCGC--GCCG- -5'
24105 3' -64.8 NC_005262.1 + 15574 0.69 0.215924
Target:  5'- aGCaGGagGAGCUGGa-GGCGCGCGcGCg -3'
miRNA:   3'- cCGcCCg-CUCGACUgcCCGCGCGC-CG- -5'
24105 3' -64.8 NC_005262.1 + 15500 0.66 0.322247
Target:  5'- cGGCGgcucgcucaccGGCGAGCUGcACaaGGCGaUGUGGUu -3'
miRNA:   3'- -CCGC-----------CCGCUCGAC-UGc-CCGC-GCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 14023 0.7 0.164337
Target:  5'- cGGCGcGGCagcggccgGAGCcu-CGGGCGCG-GGCg -3'
miRNA:   3'- -CCGC-CCG--------CUCGacuGCCCGCGCgCCG- -5'
24105 3' -64.8 NC_005262.1 + 13792 0.69 0.195241
Target:  5'- cGGUGGGCGccggcgcGGCUucaucGGCGGGaGCG-GGCg -3'
miRNA:   3'- -CCGCCCGC-------UCGA-----CUGCCCgCGCgCCG- -5'
24105 3' -64.8 NC_005262.1 + 13710 0.68 0.237884
Target:  5'- cGCGGcGCGGGUUcGGucGGCGCaGCGGCc -3'
miRNA:   3'- cCGCC-CGCUCGA-CUgcCCGCG-CGCCG- -5'
24105 3' -64.8 NC_005262.1 + 13521 0.66 0.329588
Target:  5'- -aCGGGCucGGCcgGcGCGGGCGCgcccucguuGCGGCg -3'
miRNA:   3'- ccGCCCGc-UCGa-C-UGCCCGCG---------CGCCG- -5'
24105 3' -64.8 NC_005262.1 + 13460 0.78 0.042957
Target:  5'- cGCGGGCGcuucguccuGCgcGGCGGGCGCuGCGGCc -3'
miRNA:   3'- cCGCCCGCu--------CGa-CUGCCCGCG-CGCCG- -5'
24105 3' -64.8 NC_005262.1 + 13229 0.78 0.042842
Target:  5'- aGCGGGCucGGGCUGcgguugaACGGGUGCGCGaGCc -3'
miRNA:   3'- cCGCCCG--CUCGAC-------UGCCCGCGCGC-CG- -5'
24105 3' -64.8 NC_005262.1 + 12932 0.73 0.100791
Target:  5'- uGCGcGGCGcGCUGAaGGGCGUGCgcgacGGCa -3'
miRNA:   3'- cCGC-CCGCuCGACUgCCCGCGCG-----CCG- -5'
24105 3' -64.8 NC_005262.1 + 12806 0.69 0.200614
Target:  5'- gGGCGGcGCGcAGCcGGCGcgugaagaaGGaGCGCGGCc -3'
miRNA:   3'- -CCGCC-CGC-UCGaCUGC---------CCgCGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 12564 0.68 0.232225
Target:  5'- cGGCGGcGCucgucGAGCUGcugcugccgccgGCGaGGCGuCGCGGa -3'
miRNA:   3'- -CCGCC-CG-----CUCGAC------------UGC-CCGC-GCGCCg -5'
24105 3' -64.8 NC_005262.1 + 12447 0.69 0.195241
Target:  5'- cGCGGuGcCGAGCUGcaugGCGGauucgaucuugccGCGCGCGGa -3'
miRNA:   3'- cCGCC-C-GCUCGAC----UGCC-------------CGCGCGCCg -5'
24105 3' -64.8 NC_005262.1 + 10762 0.67 0.293433
Target:  5'- cGGuUGuGGUGAuccgcccGCgc-CGGGCGCGCGGUa -3'
miRNA:   3'- -CC-GC-CCGCU-------CGacuGCCCGCGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 10461 0.75 0.075415
Target:  5'- cGGUcGGCGAGgUaGCGGcGCGCGCGGUc -3'
miRNA:   3'- -CCGcCCGCUCgAcUGCC-CGCGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 7524 0.66 0.315029
Target:  5'- -uCGGGCaGGUUcGGC-GGCGCGuCGGCg -3'
miRNA:   3'- ccGCCCGcUCGA-CUGcCCGCGC-GCCG- -5'
24105 3' -64.8 NC_005262.1 + 5366 0.68 0.249549
Target:  5'- --gGGGCGuccUUGACGGGCagggaCGCGGCc -3'
miRNA:   3'- ccgCCCGCuc-GACUGCCCGc----GCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 5181 0.74 0.088387
Target:  5'- cGGCGucGCGGGC--GCGGGCGCGgcCGGCg -3'
miRNA:   3'- -CCGCc-CGCUCGacUGCCCGCGC--GCCG- -5'
24105 3' -64.8 NC_005262.1 + 5138 0.66 0.337051
Target:  5'- -aCGGGCGGcGCUGAUccugcucGGCGCGCugaucGGUg -3'
miRNA:   3'- ccGCCCGCU-CGACUGc------CCGCGCG-----CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.