Results 101 - 108 of 108 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 24105 | 3' | -64.8 | NC_005262.1 | + | 5078 | 0.71 | 0.137197 |
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Target: 5'- cGGCGGcGCGugcgaccGGCUcGGCGGuGCGCGCccGGUu -3' miRNA: 3'- -CCGCC-CGC-------UCGA-CUGCC-CGCGCG--CCG- -5' |
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| 24105 | 3' | -64.8 | NC_005262.1 | + | 4888 | 0.66 | 0.337051 |
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Target: 5'- cGGuCGGGCcgccGGcCUGAuCGcGCaGCGCGGCa -3' miRNA: 3'- -CC-GCCCGc---UC-GACU-GCcCG-CGCGCCG- -5' |
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| 24105 | 3' | -64.8 | NC_005262.1 | + | 4623 | 0.72 | 0.127015 |
|
Target: 5'- aGCGGGCccguGAGCUGcuucuucGCGuccuccauGCGCGCGGCg -3' miRNA: 3'- cCGCCCG----CUCGAC-------UGCc-------CGCGCGCCG- -5' |
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| 24105 | 3' | -64.8 | NC_005262.1 | + | 3725 | 0.69 | 0.215924 |
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Target: 5'- aGCuGGGCcuGCgccugGAUGGGUuccGCGCGGCu -3' miRNA: 3'- cCG-CCCGcuCGa----CUGCCCG---CGCGCCG- -5' |
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| 24105 | 3' | -64.8 | NC_005262.1 | + | 1910 | 0.68 | 0.255557 |
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Target: 5'- aGCgGGGCGgaGGgUG-CGGGuUGCGUGGCu -3' miRNA: 3'- cCG-CCCGC--UCgACuGCCC-GCGCGCCG- -5' |
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| 24105 | 3' | -64.8 | NC_005262.1 | + | 1143 | 0.68 | 0.243659 |
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Target: 5'- uGCGGGCuucGAuGCUGccgcGCGGGCuugccauccuGCGCGGa -3' miRNA: 3'- cCGCCCG---CU-CGAC----UGCCCG----------CGCGCCg -5' |
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| 24105 | 3' | -64.8 | NC_005262.1 | + | 917 | 0.67 | 0.280777 |
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Target: 5'- uGGCGGGUGAuGgUGucgcccaucuucACGGGCGUGCc-- -3' miRNA: 3'- -CCGCCCGCU-CgAC------------UGCCCGCGCGccg -5' |
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| 24105 | 3' | -64.8 | NC_005262.1 | + | 466 | 0.66 | 0.329588 |
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Target: 5'- --aGGGCGuugaccucGGC-GACGcGGCGCGCGuGUu -3' miRNA: 3'- ccgCCCGC--------UCGaCUGC-CCGCGCGC-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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