Results 41 - 60 of 108 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24105 | 3' | -64.8 | NC_005262.1 | + | 51214 | 0.75 | 0.075415 |
Target: 5'- cGCGGGCGAuGCUGAucgcacCGGGCuccucaugcGCGcCGGCu -3' miRNA: 3'- cCGCCCGCU-CGACU------GCCCG---------CGC-GCCG- -5' |
|||||||
24105 | 3' | -64.8 | NC_005262.1 | + | 52612 | 0.76 | 0.066018 |
Target: 5'- -cCGGGCGAGCUGAagcgcaccggcuCGuGGCGCGCGaccGCa -3' miRNA: 3'- ccGCCCGCUCGACU------------GC-CCGCGCGC---CG- -5' |
|||||||
24105 | 3' | -64.8 | NC_005262.1 | + | 17570 | 0.77 | 0.048763 |
Target: 5'- cGGCGGcGCGcgaagccgaggagaAGCUGGCGGcgcaGCGCGCGGa -3' miRNA: 3'- -CCGCC-CGC--------------UCGACUGCC----CGCGCGCCg -5' |
|||||||
24105 | 3' | -64.8 | NC_005262.1 | + | 33924 | 0.82 | 0.021188 |
Target: 5'- cGGCGGuGcCGAGCUcgcGGCGGGCaCGCGGCa -3' miRNA: 3'- -CCGCC-C-GCUCGA---CUGCCCGcGCGCCG- -5' |
|||||||
24105 | 3' | -64.8 | NC_005262.1 | + | 56959 | 0.83 | 0.017025 |
Target: 5'- cGCGGGCGAGUUcGCGGGCGUGguCGGCa -3' miRNA: 3'- cCGCCCGCUCGAcUGCCCGCGC--GCCG- -5' |
|||||||
24105 | 3' | -64.8 | NC_005262.1 | + | 43835 | 0.7 | 0.164337 |
Target: 5'- cGCGGGCcGGCcgcgcgcGGCGGuGCGC-CGGCa -3' miRNA: 3'- cCGCCCGcUCGa------CUGCC-CGCGcGCCG- -5' |
|||||||
24105 | 3' | -64.8 | NC_005262.1 | + | 49154 | 0.7 | 0.168104 |
Target: 5'- cGGUGGGCGuGCaGGCcgcaucggccgcaGcGGCGCGCacGGCg -3' miRNA: 3'- -CCGCCCGCuCGaCUG-------------C-CCGCGCG--CCG- -5' |
|||||||
24105 | 3' | -64.8 | NC_005262.1 | + | 63655 | 0.68 | 0.226679 |
Target: 5'- uGCGGGCGAaCUGGCuGGaauugccgGCGaCGGCg -3' miRNA: 3'- cCGCCCGCUcGACUGcCCg-------CGC-GCCG- -5' |
|||||||
24105 | 3' | -64.8 | NC_005262.1 | + | 60555 | 0.68 | 0.226679 |
Target: 5'- --aGGGCacGCUGACGccGGCGCuCGGCg -3' miRNA: 3'- ccgCCCGcuCGACUGC--CCGCGcGCCG- -5' |
|||||||
24105 | 3' | -64.8 | NC_005262.1 | + | 50273 | 0.68 | 0.221246 |
Target: 5'- gGGCGcgcccgcgccGGcCGAGCccgUGACGGcCGCGCGGa -3' miRNA: 3'- -CCGC----------CC-GCUCG---ACUGCCcGCGCGCCg -5' |
|||||||
24105 | 3' | -64.8 | NC_005262.1 | + | 60639 | 0.69 | 0.215924 |
Target: 5'- uGGCGagcGGCGAGCaccGCGGGCaagcacucaucGCGCucGGCa -3' miRNA: 3'- -CCGC---CCGCUCGac-UGCCCG-----------CGCG--CCG- -5' |
|||||||
24105 | 3' | -64.8 | NC_005262.1 | + | 3725 | 0.69 | 0.215924 |
Target: 5'- aGCuGGGCcuGCgccugGAUGGGUuccGCGCGGCu -3' miRNA: 3'- cCG-CCCGcuCGa----CUGCCCG---CGCGCCG- -5' |
|||||||
24105 | 3' | -64.8 | NC_005262.1 | + | 15574 | 0.69 | 0.215924 |
Target: 5'- aGCaGGagGAGCUGGa-GGCGCGCGcGCg -3' miRNA: 3'- cCGcCCg-CUCGACUgcCCGCGCGC-CG- -5' |
|||||||
24105 | 3' | -64.8 | NC_005262.1 | + | 50740 | 0.69 | 0.207638 |
Target: 5'- aGGCcGGCGAgacgcacgagaucguGCaGACGGGCaagGUGCGGUu -3' miRNA: 3'- -CCGcCCGCU---------------CGaCUGCCCG---CGCGCCG- -5' |
|||||||
24105 | 3' | -64.8 | NC_005262.1 | + | 12806 | 0.69 | 0.200614 |
Target: 5'- gGGCGGcGCGcAGCcGGCGcgugaagaaGGaGCGCGGCc -3' miRNA: 3'- -CCGCC-CGC-UCGaCUGC---------CCgCGCGCCG- -5' |
|||||||
24105 | 3' | -64.8 | NC_005262.1 | + | 35235 | 0.69 | 0.195724 |
Target: 5'- cGGCGGcGCGAucgGCagcGGCuGGGCGCcccCGGCg -3' miRNA: 3'- -CCGCC-CGCU---CGa--CUG-CCCGCGc--GCCG- -5' |
|||||||
24105 | 3' | -64.8 | NC_005262.1 | + | 53767 | 0.7 | 0.181676 |
Target: 5'- aGGaGGGCGGGCUGuACGucGGCGauacCGGCa -3' miRNA: 3'- -CCgCCCGCUCGAC-UGC--CCGCgc--GCCG- -5' |
|||||||
24105 | 3' | -64.8 | NC_005262.1 | + | 29914 | 0.7 | 0.168952 |
Target: 5'- gGGCGaugcgaccacgcucGGCGAuaGCUGaaggacgacccggacGCGGGCG-GCGGCg -3' miRNA: 3'- -CCGC--------------CCGCU--CGAC---------------UGCCCGCgCGCCG- -5' |
|||||||
24105 | 3' | -64.8 | NC_005262.1 | + | 59062 | 0.7 | 0.168527 |
Target: 5'- aGGUgcaGGaGCGcaucaagaAGCUGACGGGCGUGaaggagcuCGGCa -3' miRNA: 3'- -CCG---CC-CGC--------UCGACUGCCCGCGC--------GCCG- -5' |
|||||||
24105 | 3' | -64.8 | NC_005262.1 | + | 58639 | 0.7 | 0.168527 |
Target: 5'- cGGCaGuCGAGCgGcCGGGCGCGCGaGUu -3' miRNA: 3'- -CCGcCcGCUCGaCuGCCCGCGCGC-CG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home