miRNA display CGI


Results 61 - 80 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24105 3' -64.8 NC_005262.1 + 12806 0.69 0.200614
Target:  5'- gGGCGGcGCGcAGCcGGCGcgugaagaaGGaGCGCGGCc -3'
miRNA:   3'- -CCGCC-CGC-UCGaCUGC---------CCgCGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 50740 0.69 0.207638
Target:  5'- aGGCcGGCGAgacgcacgagaucguGCaGACGGGCaagGUGCGGUu -3'
miRNA:   3'- -CCGcCCGCU---------------CGaCUGCCCG---CGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 16083 0.66 0.300961
Target:  5'- aGGC-GGCGAGCcgccgcccGGCGcGGUGCuuGGCg -3'
miRNA:   3'- -CCGcCCGCUCGa-------CUGC-CCGCGcgCCG- -5'
24105 3' -64.8 NC_005262.1 + 20717 0.66 0.30027
Target:  5'- cGGuCaGGuCGAugaugaaGCUGcCGcGGCGCGCGGUg -3'
miRNA:   3'- -CC-GcCC-GCU-------CGACuGC-CCGCGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 34042 0.67 0.294111
Target:  5'- gGGCGguugaGGCGGGUUaGcCGGGaGCGcCGGCu -3'
miRNA:   3'- -CCGC-----CCGCUCGA-CuGCCCgCGC-GCCG- -5'
24105 3' -64.8 NC_005262.1 + 917 0.67 0.280777
Target:  5'- uGGCGGGUGAuGgUGucgcccaucuucACGGGCGUGCc-- -3'
miRNA:   3'- -CCGCCCGCU-CgAC------------UGCCCGCGCGccg -5'
24105 3' -64.8 NC_005262.1 + 29643 0.67 0.267297
Target:  5'- uGCcGGCGAcgGCcGGCGGGUagacguagaagauGCGCGGUg -3'
miRNA:   3'- cCGcCCGCU--CGaCUGCCCG-------------CGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 62319 0.68 0.255557
Target:  5'- aGCGGcaGCGccGGCaGACGaGCGgGCGGCg -3'
miRNA:   3'- cCGCC--CGC--UCGaCUGCcCGCgCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 40247 0.68 0.255557
Target:  5'- cGGCGGGCG-GUUGGucaGucUGCGCGGUc -3'
miRNA:   3'- -CCGCCCGCuCGACUg--CccGCGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 46697 0.68 0.249549
Target:  5'- cGGUGGaccuccucGCGGcccgccGCgucGACGGGCGCGCcuaucGGCg -3'
miRNA:   3'- -CCGCC--------CGCU------CGa--CUGCCCGCGCG-----CCG- -5'
24105 3' -64.8 NC_005262.1 + 22708 0.66 0.300961
Target:  5'- uGGCcGGCGGcGUUGACGaGCGUGcCGGg -3'
miRNA:   3'- -CCGcCCGCU-CGACUGCcCGCGC-GCCg -5'
24105 3' -64.8 NC_005262.1 + 30438 0.66 0.300961
Target:  5'- cGGCcGGCGGGUUGucgaucggcggcACGGuGcCGCGCaGCg -3'
miRNA:   3'- -CCGcCCGCUCGAC------------UGCC-C-GCGCGcCG- -5'
24105 3' -64.8 NC_005262.1 + 34126 0.87 0.008812
Target:  5'- gGGuUGGGCGGGCUGcGCGGGCGCggGCGGCa -3'
miRNA:   3'- -CC-GCCCGCUCGAC-UGCCCGCG--CGCCG- -5'
24105 3' -64.8 NC_005262.1 + 4888 0.66 0.337051
Target:  5'- cGGuCGGGCcgccGGcCUGAuCGcGCaGCGCGGCa -3'
miRNA:   3'- -CC-GCCCGc---UC-GACU-GCcCG-CGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 13521 0.66 0.329588
Target:  5'- -aCGGGCucGGCcgGcGCGGGCGCgcccucguuGCGGCg -3'
miRNA:   3'- ccGCCCGc-UCGa-C-UGCCCGCG---------CGCCG- -5'
24105 3' -64.8 NC_005262.1 + 54101 0.66 0.329588
Target:  5'- gGGUuuGGcGCGAGCcuuguucaUGACGGuguuuGCGCaggaGCGGCa -3'
miRNA:   3'- -CCG--CC-CGCUCG--------ACUGCC-----CGCG----CGCCG- -5'
24105 3' -64.8 NC_005262.1 + 466 0.66 0.329588
Target:  5'- --aGGGCGuugaccucGGC-GACGcGGCGCGCGuGUu -3'
miRNA:   3'- ccgCCCGC--------UCGaCUGC-CCGCGCGC-CG- -5'
24105 3' -64.8 NC_005262.1 + 34981 0.66 0.315029
Target:  5'- cGCGacGCGAGCUcgagaugcGCGGGCGCGaGGUc -3'
miRNA:   3'- cCGCc-CGCUCGAc-------UGCCCGCGCgCCG- -5'
24105 3' -64.8 NC_005262.1 + 17260 0.66 0.315029
Target:  5'- cGGCGGccggcgccgcGCuGGGCUGcugcgcgggcAgGGGCGuCGCGGUc -3'
miRNA:   3'- -CCGCC----------CG-CUCGAC----------UgCCCGC-GCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 60352 0.66 0.300961
Target:  5'- gGGCGGuuCGAGCUGAucccCGaGCGCgcugaagcgauGCGGCu -3'
miRNA:   3'- -CCGCCc-GCUCGACU----GCcCGCG-----------CGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.