miRNA display CGI


Results 21 - 40 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24105 3' -64.8 NC_005262.1 + 52360 0.68 0.221784
Target:  5'- cGCGGGCGcGGCgugucgcgcaccuucGGCGGcccgGCGCGGCg -3'
miRNA:   3'- cCGCCCGC-UCGa--------------CUGCCcg--CGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 5366 0.68 0.249549
Target:  5'- --gGGGCGuccUUGACGGGCagggaCGCGGCc -3'
miRNA:   3'- ccgCCCGCuc-GACUGCCCGc----GCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 16083 0.66 0.300961
Target:  5'- aGGC-GGCGAGCcgccgcccGGCGcGGUGCuuGGCg -3'
miRNA:   3'- -CCGcCCGCUCGa-------CUGC-CCGCGcgCCG- -5'
24105 3' -64.8 NC_005262.1 + 54101 0.66 0.329588
Target:  5'- gGGUuuGGcGCGAGCcuuguucaUGACGGuguuuGCGCaggaGCGGCa -3'
miRNA:   3'- -CCG--CC-CGCUCG--------ACUGCC-----CGCG----CGCCG- -5'
24105 3' -64.8 NC_005262.1 + 14023 0.7 0.164337
Target:  5'- cGGCGcGGCagcggccgGAGCcu-CGGGCGCG-GGCg -3'
miRNA:   3'- -CCGC-CCG--------CUCGacuGCCCGCGCgCCG- -5'
24105 3' -64.8 NC_005262.1 + 37158 0.69 0.195724
Target:  5'- aGGCGGuGCGccAGCUacGCGGGCGCuucgauuugcccGCGGg -3'
miRNA:   3'- -CCGCC-CGC--UCGAc-UGCCCGCG------------CGCCg -5'
24105 3' -64.8 NC_005262.1 + 46697 0.68 0.249549
Target:  5'- cGGUGGaccuccucGCGGcccgccGCgucGACGGGCGCGCcuaucGGCg -3'
miRNA:   3'- -CCGCC--------CGCU------CGa--CUGCCCGCGCG-----CCG- -5'
24105 3' -64.8 NC_005262.1 + 13521 0.66 0.329588
Target:  5'- -aCGGGCucGGCcgGcGCGGGCGCgcccucguuGCGGCg -3'
miRNA:   3'- ccGCCCGc-UCGa-C-UGCCCGCG---------CGCCG- -5'
24105 3' -64.8 NC_005262.1 + 17394 0.69 0.205609
Target:  5'- uGCGGGCccAGCccGACGaGGCGCGCcuguucGGCc -3'
miRNA:   3'- cCGCCCGc-UCGa-CUGC-CCGCGCG------CCG- -5'
24105 3' -64.8 NC_005262.1 + 4888 0.66 0.337051
Target:  5'- cGGuCGGGCcgccGGcCUGAuCGcGCaGCGCGGCa -3'
miRNA:   3'- -CC-GCCCGc---UC-GACU-GCcCG-CGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 39939 0.68 0.249549
Target:  5'- cGGaCGGGCGgcaccGGCaagGGCGGcGUGC-CGGCc -3'
miRNA:   3'- -CC-GCCCGC-----UCGa--CUGCC-CGCGcGCCG- -5'
24105 3' -64.8 NC_005262.1 + 41560 0.68 0.221246
Target:  5'- aGGCcGGCcGGCg--UGGGCgGCGCGGCc -3'
miRNA:   3'- -CCGcCCGcUCGacuGCCCG-CGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 29643 0.67 0.267297
Target:  5'- uGCcGGCGAcgGCcGGCGGGUagacguagaagauGCGCGGUg -3'
miRNA:   3'- cCGcCCGCU--CGaCUGCCCG-------------CGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 20717 0.66 0.30027
Target:  5'- cGGuCaGGuCGAugaugaaGCUGcCGcGGCGCGCGGUg -3'
miRNA:   3'- -CC-GcCC-GCU-------CGACuGC-CCGCGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 60352 0.66 0.300961
Target:  5'- gGGCGGuuCGAGCUGAucccCGaGCGCgcugaagcgauGCGGCu -3'
miRNA:   3'- -CCGCCc-GCUCGACU----GCcCGCG-----------CGCCG- -5'
24105 3' -64.8 NC_005262.1 + 466 0.66 0.329588
Target:  5'- --aGGGCGuugaccucGGC-GACGcGGCGCGCGuGUu -3'
miRNA:   3'- ccgCCCGC--------UCGaCUGC-CCGCGCGC-CG- -5'
24105 3' -64.8 NC_005262.1 + 4623 0.72 0.127015
Target:  5'- aGCGGGCccguGAGCUGcuucuucGCGuccuccauGCGCGCGGCg -3'
miRNA:   3'- cCGCCCG----CUCGAC-------UGCc-------CGCGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 15740 0.71 0.144396
Target:  5'- cGGCaGGuGCGAccgacgcGCUuGCGGGCGCGgcCGGCu -3'
miRNA:   3'- -CCG-CC-CGCU-------CGAcUGCCCGCGC--GCCG- -5'
24105 3' -64.8 NC_005262.1 + 52742 0.7 0.177195
Target:  5'- gGGCucaGGCGAcGCUG-CGGccuguugcuGCGCGCGGUc -3'
miRNA:   3'- -CCGc--CCGCU-CGACuGCC---------CGCGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 13792 0.69 0.195241
Target:  5'- cGGUGGGCGccggcgcGGCUucaucGGCGGGaGCG-GGCg -3'
miRNA:   3'- -CCGCCCGC-------UCGA-----CUGCCCgCGCgCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.