miRNA display CGI


Results 41 - 60 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24105 3' -64.8 NC_005262.1 + 52360 0.68 0.221784
Target:  5'- cGCGGGCGcGGCgugucgcgcaccuucGGCGGcccgGCGCGGCg -3'
miRNA:   3'- cCGCCCGC-UCGa--------------CUGCCcg--CGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 5366 0.68 0.249549
Target:  5'- --gGGGCGuccUUGACGGGCagggaCGCGGCc -3'
miRNA:   3'- ccgCCCGCuc-GACUGCCCGc----GCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 29643 0.67 0.267297
Target:  5'- uGCcGGCGAcgGCcGGCGGGUagacguagaagauGCGCGGUg -3'
miRNA:   3'- cCGcCCGCU--CGaCUGCCCG-------------CGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 20717 0.66 0.30027
Target:  5'- cGGuCaGGuCGAugaugaaGCUGcCGcGGCGCGCGGUg -3'
miRNA:   3'- -CC-GcCC-GCU-------CGACuGC-CCGCGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 60352 0.66 0.300961
Target:  5'- gGGCGGuuCGAGCUGAucccCGaGCGCgcugaagcgauGCGGCu -3'
miRNA:   3'- -CCGCCc-GCUCGACU----GCcCGCG-----------CGCCG- -5'
24105 3' -64.8 NC_005262.1 + 466 0.66 0.329588
Target:  5'- --aGGGCGuugaccucGGC-GACGcGGCGCGCGuGUu -3'
miRNA:   3'- ccgCCCGC--------UCGaCUGC-CCGCGCGC-CG- -5'
24105 3' -64.8 NC_005262.1 + 5138 0.66 0.337051
Target:  5'- -aCGGGCGGcGCUGAUccugcucGGCGCGCugaucGGUg -3'
miRNA:   3'- ccGCCCGCU-CGACUGc------CCGCGCG-----CCG- -5'
24105 3' -64.8 NC_005262.1 + 61460 0.66 0.337051
Target:  5'- cGGCGGacgGCGAagcGCUaGACGacaucuuCGCGCGGCc -3'
miRNA:   3'- -CCGCC---CGCU---CGA-CUGCcc-----GCGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 62511 0.66 0.337051
Target:  5'- cGGgGGGCGuccuGCUGGCGaaaaucgccGGCcuuuGgGCGGUu -3'
miRNA:   3'- -CCgCCCGCu---CGACUGC---------CCG----CgCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 61643 0.66 0.337051
Target:  5'- --aGGGCGAGgaGGaagugcuguacCGcGGCGCGCuggaGGCg -3'
miRNA:   3'- ccgCCCGCUCgaCU-----------GC-CCGCGCG----CCG- -5'
24105 3' -64.8 NC_005262.1 + 45435 0.66 0.329588
Target:  5'- gGGCuuauGGGCGGGCUcGgaaccaucGCcGGCGCG-GGCa -3'
miRNA:   3'- -CCG----CCCGCUCGA-C--------UGcCCGCGCgCCG- -5'
24105 3' -64.8 NC_005262.1 + 24786 0.66 0.329588
Target:  5'- -cCGGGCGAGCacuucGACaucgcgaaGGGCaaGCGCGaGCu -3'
miRNA:   3'- ccGCCCGCUCGa----CUG--------CCCG--CGCGC-CG- -5'
24105 3' -64.8 NC_005262.1 + 43835 0.7 0.164337
Target:  5'- cGCGGGCcGGCcgcgcgcGGCGGuGCGC-CGGCa -3'
miRNA:   3'- cCGCCCGcUCGa------CUGCC-CGCGcGCCG- -5'
24105 3' -64.8 NC_005262.1 + 40544 0.66 0.328848
Target:  5'- cGGCGGGCG-GCUcuuacgcGcCGGGCaacaccgGCGGUg -3'
miRNA:   3'- -CCGCCCGCuCGA-------CuGCCCGcg-----CGCCG- -5'
24105 3' -64.8 NC_005262.1 + 60555 0.68 0.226679
Target:  5'- --aGGGCacGCUGACGccGGCGCuCGGCg -3'
miRNA:   3'- ccgCCCGcuCGACUGC--CCGCGcGCCG- -5'
24105 3' -64.8 NC_005262.1 + 63655 0.68 0.226679
Target:  5'- uGCGGGCGAaCUGGCuGGaauugccgGCGaCGGCg -3'
miRNA:   3'- cCGCCCGCUcGACUGcCCg-------CGC-GCCG- -5'
24105 3' -64.8 NC_005262.1 + 12564 0.68 0.232225
Target:  5'- cGGCGGcGCucgucGAGCUGcugcugccgccgGCGaGGCGuCGCGGa -3'
miRNA:   3'- -CCGCC-CG-----CUCGAC------------UGC-CCGC-GCGCCg -5'
24105 3' -64.8 NC_005262.1 + 60492 0.75 0.081655
Target:  5'- --aGGGCGAGacgcCGGGcCGCGCGGCg -3'
miRNA:   3'- ccgCCCGCUCgacuGCCC-GCGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 35164 0.68 0.243076
Target:  5'- -cCGGGCGAcGCUGGCGGcaauGaggucacgaccgcCGCGUGGCc -3'
miRNA:   3'- ccGCCCGCU-CGACUGCC----C-------------GCGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 40721 0.71 0.141114
Target:  5'- cGGCGGcGCugacgcccucGAGC--ACGGGCG-GCGGCg -3'
miRNA:   3'- -CCGCC-CG----------CUCGacUGCCCGCgCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.