miRNA display CGI


Results 61 - 80 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24105 3' -64.8 NC_005262.1 + 20579 0.67 0.294111
Target:  5'- aGCccGGCGAGCaGcGCGcGGCGCGCcGCa -3'
miRNA:   3'- cCGc-CCGCUCGaC-UGC-CCGCGCGcCG- -5'
24105 3' -64.8 NC_005262.1 + 17036 0.67 0.294111
Target:  5'- aGGCGGaaaagcagcuccGCGAGCUcGuCGcGCGCaCGGCg -3'
miRNA:   3'- -CCGCC------------CGCUCGA-CuGCcCGCGcGCCG- -5'
24105 3' -64.8 NC_005262.1 + 50740 0.69 0.207638
Target:  5'- aGGCcGGCGAgacgcacgagaucguGCaGACGGGCaagGUGCGGUu -3'
miRNA:   3'- -CCGcCCGCU---------------CGaCUGCCCG---CGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 15574 0.69 0.215924
Target:  5'- aGCaGGagGAGCUGGa-GGCGCGCGcGCg -3'
miRNA:   3'- cCGcCCg-CUCGACUgcCCGCGCGC-CG- -5'
24105 3' -64.8 NC_005262.1 + 3725 0.69 0.215924
Target:  5'- aGCuGGGCcuGCgccugGAUGGGUuccGCGCGGCu -3'
miRNA:   3'- cCG-CCCGcuCGa----CUGCCCG---CGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 60639 0.69 0.215924
Target:  5'- uGGCGagcGGCGAGCaccGCGGGCaagcacucaucGCGCucGGCa -3'
miRNA:   3'- -CCGC---CCGCUCGac-UGCCCG-----------CGCG--CCG- -5'
24105 3' -64.8 NC_005262.1 + 50273 0.68 0.221246
Target:  5'- gGGCGcgcccgcgccGGcCGAGCccgUGACGGcCGCGCGGa -3'
miRNA:   3'- -CCGC----------CC-GCUCG---ACUGCCcGCGCGCCg -5'
24105 3' -64.8 NC_005262.1 + 60555 0.68 0.226679
Target:  5'- --aGGGCacGCUGACGccGGCGCuCGGCg -3'
miRNA:   3'- ccgCCCGcuCGACUGC--CCGCGcGCCG- -5'
24105 3' -64.8 NC_005262.1 + 63655 0.68 0.226679
Target:  5'- uGCGGGCGAaCUGGCuGGaauugccgGCGaCGGCg -3'
miRNA:   3'- cCGCCCGCUcGACUGcCCg-------CGC-GCCG- -5'
24105 3' -64.8 NC_005262.1 + 33638 0.66 0.300961
Target:  5'- cGGCGcaGGUGuccgaGGCUGACGaGCGCGCcucGCu -3'
miRNA:   3'- -CCGC--CCGC-----UCGACUGCcCGCGCGc--CG- -5'
24105 3' -64.8 NC_005262.1 + 49686 0.66 0.306529
Target:  5'- cGGCGGcGCGcGCaaccugaaccgcGACGGcGUGCcggGCGGCg -3'
miRNA:   3'- -CCGCC-CGCuCGa-----------CUGCC-CGCG---CGCCG- -5'
24105 3' -64.8 NC_005262.1 + 61643 0.66 0.337051
Target:  5'- --aGGGCGAGgaGGaagugcuguacCGcGGCGCGCuggaGGCg -3'
miRNA:   3'- ccgCCCGCUCgaCU-----------GC-CCGCGCG----CCG- -5'
24105 3' -64.8 NC_005262.1 + 45435 0.66 0.329588
Target:  5'- gGGCuuauGGGCGGGCUcGgaaccaucGCcGGCGCG-GGCa -3'
miRNA:   3'- -CCG----CCCGCUCGA-C--------UGcCCGCGCgCCG- -5'
24105 3' -64.8 NC_005262.1 + 24786 0.66 0.329588
Target:  5'- -cCGGGCGAGCacuucGACaucgcgaaGGGCaaGCGCGaGCu -3'
miRNA:   3'- ccGCCCGCUCGa----CUG--------CCCG--CGCGC-CG- -5'
24105 3' -64.8 NC_005262.1 + 40544 0.66 0.328848
Target:  5'- cGGCGGGCG-GCUcuuacgcGcCGGGCaacaccgGCGGUg -3'
miRNA:   3'- -CCGCCCGCuCGA-------CuGCCCGcg-----CGCCG- -5'
24105 3' -64.8 NC_005262.1 + 34852 0.66 0.322247
Target:  5'- cGCGcGCGAGCacaUGACccucaucucgugGGGCGCGCucGCg -3'
miRNA:   3'- cCGCcCGCUCG---ACUG------------CCCGCGCGc-CG- -5'
24105 3' -64.8 NC_005262.1 + 15500 0.66 0.322247
Target:  5'- cGGCGgcucgcucaccGGCGAGCUGcACaaGGCGaUGUGGUu -3'
miRNA:   3'- -CCGC-----------CCGCUCGAC-UGc-CCGC-GCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 34950 0.66 0.315029
Target:  5'- cGGC-GGCaAGUUcGACGcGGCGCuCGGCc -3'
miRNA:   3'- -CCGcCCGcUCGA-CUGC-CCGCGcGCCG- -5'
24105 3' -64.8 NC_005262.1 + 7524 0.66 0.315029
Target:  5'- -uCGGGCaGGUUcGGC-GGCGCGuCGGCg -3'
miRNA:   3'- ccGCCCGcUCGA-CUGcCCGCGC-GCCG- -5'
24105 3' -64.8 NC_005262.1 + 35645 0.66 0.307934
Target:  5'- cGGCGGGCGAuggGCUacuCGGuGC-CGCaGCu -3'
miRNA:   3'- -CCGCCCGCU---CGAcu-GCC-CGcGCGcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.