Results 101 - 108 of 108 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
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Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 24105 | 3' | -64.8 | NC_005262.1 | + | 37906 | 0.68 | 0.255557 |
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Target: 5'- uGGUGGcGCGGGCUauaucgcgugGACGauuGGCGCGCa-- -3' miRNA: 3'- -CCGCC-CGCUCGA----------CUGC---CCGCGCGccg -5' |
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| 24105 | 3' | -64.8 | NC_005262.1 | + | 24733 | 0.67 | 0.261683 |
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Target: 5'- cGCuGGCGcGCgcGAUcGGCGUGCGGCc -3' miRNA: 3'- cCGcCCGCuCGa-CUGcCCGCGCGCCG- -5' |
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| 24105 | 3' | -64.8 | NC_005262.1 | + | 48468 | 0.67 | 0.266669 |
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Target: 5'- cGCGGaucGCGAGCcgcgugggcacgGGC-GGCGCGaCGGCa -3' miRNA: 3'- cCGCC---CGCUCGa-----------CUGcCCGCGC-GCCG- -5' |
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| 24105 | 3' | -64.8 | NC_005262.1 | + | 26336 | 0.67 | 0.267927 |
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Target: 5'- uGCucGagGAGCUGAugcCGGGCGUGCGGUu -3' miRNA: 3'- cCGccCg-CUCGACU---GCCCGCGCGCCG- -5' |
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| 24105 | 3' | -64.8 | NC_005262.1 | + | 17099 | 0.67 | 0.267927 |
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Target: 5'- cGGCGGGCcgcGAGgaGGuCcacCGCGCGGCg -3' miRNA: 3'- -CCGCCCG---CUCgaCU-GcccGCGCGCCG- -5' |
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| 24105 | 3' | -64.8 | NC_005262.1 | + | 36533 | 0.67 | 0.267927 |
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Target: 5'- cGGCGcGGCGA-CUGGgauuauCGGGCGCacgauccucGCGGa -3' miRNA: 3'- -CCGC-CCGCUcGACU------GCCCGCG---------CGCCg -5' |
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| 24105 | 3' | -64.8 | NC_005262.1 | + | 43387 | 0.67 | 0.274292 |
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Target: 5'- cGGCGauGCGAGCaucGGCGGcgaGCucaacgGCGCGGCg -3' miRNA: 3'- -CCGCc-CGCUCGa--CUGCC---CG------CGCGCCG- -5' |
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| 24105 | 3' | -64.8 | NC_005262.1 | + | 24786 | 0.66 | 0.329588 |
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Target: 5'- -cCGGGCGAGCacuucGACaucgcgaaGGGCaaGCGCGaGCu -3' miRNA: 3'- ccGCCCGCUCGa----CUG--------CCCG--CGCGC-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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