miRNA display CGI


Results 21 - 40 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24105 3' -64.8 NC_005262.1 + 17260 0.66 0.315029
Target:  5'- cGGCGGccggcgccgcGCuGGGCUGcugcgcgggcAgGGGCGuCGCGGUc -3'
miRNA:   3'- -CCGCC----------CG-CUCGAC----------UgCCCGC-GCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 35645 0.66 0.307934
Target:  5'- cGGCGGGCGAuggGCUacuCGGuGC-CGCaGCu -3'
miRNA:   3'- -CCGCCCGCU---CGAcu-GCC-CGcGCGcCG- -5'
24105 3' -64.8 NC_005262.1 + 49686 0.66 0.306529
Target:  5'- cGGCGGcGCGcGCaaccugaaccgcGACGGcGUGCcggGCGGCg -3'
miRNA:   3'- -CCGCC-CGCuCGa-----------CUGCC-CGCG---CGCCG- -5'
24105 3' -64.8 NC_005262.1 + 16083 0.66 0.300961
Target:  5'- aGGC-GGCGAGCcgccgcccGGCGcGGUGCuuGGCg -3'
miRNA:   3'- -CCGcCCGCUCGa-------CUGC-CCGCGcgCCG- -5'
24105 3' -64.8 NC_005262.1 + 22708 0.66 0.300961
Target:  5'- uGGCcGGCGGcGUUGACGaGCGUGcCGGg -3'
miRNA:   3'- -CCGcCCGCU-CGACUGCcCGCGC-GCCg -5'
24105 3' -64.8 NC_005262.1 + 30438 0.66 0.300961
Target:  5'- cGGCcGGCGGGUUGucgaucggcggcACGGuGcCGCGCaGCg -3'
miRNA:   3'- -CCGcCCGCUCGAC------------UGCC-C-GCGCGcCG- -5'
24105 3' -64.8 NC_005262.1 + 60352 0.66 0.300961
Target:  5'- gGGCGGuuCGAGCUGAucccCGaGCGCgcugaagcgauGCGGCu -3'
miRNA:   3'- -CCGCCc-GCUCGACU----GCcCGCG-----------CGCCG- -5'
24105 3' -64.8 NC_005262.1 + 33638 0.66 0.300961
Target:  5'- cGGCGcaGGUGuccgaGGCUGACGaGCGCGCcucGCu -3'
miRNA:   3'- -CCGC--CCGC-----UCGACUGCcCGCGCGc--CG- -5'
24105 3' -64.8 NC_005262.1 + 20717 0.66 0.30027
Target:  5'- cGGuCaGGuCGAugaugaaGCUGcCGcGGCGCGCGGUg -3'
miRNA:   3'- -CC-GcCC-GCU-------CGACuGC-CCGCGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 17036 0.67 0.294111
Target:  5'- aGGCGGaaaagcagcuccGCGAGCUcGuCGcGCGCaCGGCg -3'
miRNA:   3'- -CCGCC------------CGCUCGA-CuGCcCGCGcGCCG- -5'
24105 3' -64.8 NC_005262.1 + 20579 0.67 0.294111
Target:  5'- aGCccGGCGAGCaGcGCGcGGCGCGCcGCa -3'
miRNA:   3'- cCGc-CCGCUCGaC-UGC-CCGCGCGcCG- -5'
24105 3' -64.8 NC_005262.1 + 34042 0.67 0.294111
Target:  5'- gGGCGguugaGGCGGGUUaGcCGGGaGCGcCGGCu -3'
miRNA:   3'- -CCGC-----CCGCUCGA-CuGCCCgCGC-GCCG- -5'
24105 3' -64.8 NC_005262.1 + 10762 0.67 0.293433
Target:  5'- cGGuUGuGGUGAuccgcccGCgc-CGGGCGCGCGGUa -3'
miRNA:   3'- -CC-GC-CCGCU-------CGacuGCCCGCGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 43663 0.67 0.286052
Target:  5'- uGGCacguGGCGAcCUGAacgcaagccaagcCGGGCcgaauucGCGCGGCg -3'
miRNA:   3'- -CCGc---CCGCUcGACU-------------GCCCG-------CGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 33970 0.67 0.285388
Target:  5'- cGCGGcGuCGAGCUgcugGACgucgugcguaacauGGGCGCGgaCGGCg -3'
miRNA:   3'- cCGCC-C-GCUCGA----CUG--------------CCCGCGC--GCCG- -5'
24105 3' -64.8 NC_005262.1 + 917 0.67 0.280777
Target:  5'- uGGCGGGUGAuGgUGucgcccaucuucACGGGCGUGCc-- -3'
miRNA:   3'- -CCGCCCGCU-CgAC------------UGCCCGCGCGccg -5'
24105 3' -64.8 NC_005262.1 + 43387 0.67 0.274292
Target:  5'- cGGCGauGCGAGCaucGGCGGcgaGCucaacgGCGCGGCg -3'
miRNA:   3'- -CCGCc-CGCUCGa--CUGCC---CG------CGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 26336 0.67 0.267927
Target:  5'- uGCucGagGAGCUGAugcCGGGCGUGCGGUu -3'
miRNA:   3'- cCGccCg-CUCGACU---GCCCGCGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 17099 0.67 0.267927
Target:  5'- cGGCGGGCcgcGAGgaGGuCcacCGCGCGGCg -3'
miRNA:   3'- -CCGCCCG---CUCgaCU-GcccGCGCGCCG- -5'
24105 3' -64.8 NC_005262.1 + 36533 0.67 0.267927
Target:  5'- cGGCGcGGCGA-CUGGgauuauCGGGCGCacgauccucGCGGa -3'
miRNA:   3'- -CCGC-CCGCUcGACU------GCCCGCG---------CGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.