miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24105 5' -57.2 NC_005262.1 + 13327 0.66 0.682108
Target:  5'- -cACCUgAaGAAGGUCGGCCCGa--- -3'
miRNA:   3'- gcUGGAgUgCUUCCAGUCGGGCcucu -5'
24105 5' -57.2 NC_005262.1 + 1045 0.66 0.682108
Target:  5'- uCGACaauaggCGCGA---UCGGCCCGGAGc -3'
miRNA:   3'- -GCUGga----GUGCUuccAGUCGGGCCUCu -5'
24105 5' -57.2 NC_005262.1 + 17283 0.66 0.660872
Target:  5'- -cACCUacgaCACGAAGGuUCGGCa-GGAGAa -3'
miRNA:   3'- gcUGGA----GUGCUUCC-AGUCGggCCUCU- -5'
24105 5' -57.2 NC_005262.1 + 29192 0.67 0.618174
Target:  5'- cCGAgCUgAUGGAGGUCAucggcaagauGCCgcCGGAGAu -3'
miRNA:   3'- -GCUgGAgUGCUUCCAGU----------CGG--GCCUCU- -5'
24105 5' -57.2 NC_005262.1 + 20528 0.67 0.60644
Target:  5'- aCGACCUCAccccacuCGAAGG--GGCUCGG-GAa -3'
miRNA:   3'- -GCUGGAGU-------GCUUCCagUCGGGCCuCU- -5'
24105 5' -57.2 NC_005262.1 + 61403 0.68 0.575655
Target:  5'- aCGACCUCgcgcgcgagGCGAAGGcggCGGCCgaGGAa- -3'
miRNA:   3'- -GCUGGAG---------UGCUUCCa--GUCGGg-CCUcu -5'
24105 5' -57.2 NC_005262.1 + 16835 0.68 0.575655
Target:  5'- gCGACUUCGUGAAGGUCGGUUCGa--- -3'
miRNA:   3'- -GCUGGAGUGCUUCCAGUCGGGCcucu -5'
24105 5' -57.2 NC_005262.1 + 49135 0.68 0.554626
Target:  5'- -uAUCUgGCGAAGGUCGGCaCGGuGGg -3'
miRNA:   3'- gcUGGAgUGCUUCCAGUCGgGCCuCU- -5'
24105 5' -57.2 NC_005262.1 + 16772 0.68 0.523534
Target:  5'- gCGAUUUCGCGAucgcgauGaUCAGCCCGGAc- -3'
miRNA:   3'- -GCUGGAGUGCUu------CcAGUCGGGCCUcu -5'
24105 5' -57.2 NC_005262.1 + 49641 0.69 0.477253
Target:  5'- uGGCCUCGCGAucGG-CGGCCUgcaaggcggcggcauGGGGAu -3'
miRNA:   3'- gCUGGAGUGCUu-CCaGUCGGG---------------CCUCU- -5'
24105 5' -57.2 NC_005262.1 + 14236 0.7 0.453921
Target:  5'- uCGACCacgCACGAgcAGGacgCAGCgucgCCGGAGAc -3'
miRNA:   3'- -GCUGGa--GUGCU--UCCa--GUCG----GGCCUCU- -5'
24105 5' -57.2 NC_005262.1 + 45240 0.7 0.407396
Target:  5'- aCGGCgUCGCGAAGGUCAucaaccguGCCgguCGGGGc -3'
miRNA:   3'- -GCUGgAGUGCUUCCAGU--------CGG---GCCUCu -5'
24105 5' -57.2 NC_005262.1 + 34428 0.71 0.375805
Target:  5'- aCGAauuCCUCACGAAGGUUcugccguucgcuccgGgcuGCCCGGAGc -3'
miRNA:   3'- -GCU---GGAGUGCUUCCAG---------------U---CGGGCCUCu -5'
24105 5' -57.2 NC_005262.1 + 41021 0.74 0.266722
Target:  5'- gCGAUCUCGCu----UCAGCCCGGAGAg -3'
miRNA:   3'- -GCUGGAGUGcuuccAGUCGGGCCUCU- -5'
24105 5' -57.2 NC_005262.1 + 61202 1.09 0.000879
Target:  5'- aCGACCUCACGAAGGUCAGCCCGGAGAc -3'
miRNA:   3'- -GCUGGAGUGCUUCCAGUCGGGCCUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.