miRNA display CGI


Results 61 - 80 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24106 3' -59.5 NC_005262.1 + 52790 0.68 0.392506
Target:  5'- aGCcGCCUCGCucgucagccGUGCGAGcGCGAccGGCg -3'
miRNA:   3'- aUGcUGGAGCG---------CGCGCUC-CGCUu-CCG- -5'
24106 3' -59.5 NC_005262.1 + 20222 0.68 0.401288
Target:  5'- cGCuGACCUCGaccucccacgucUGCGCGAGGaaucCGGAcGGCa -3'
miRNA:   3'- aUG-CUGGAGC------------GCGCGCUCC----GCUU-CCG- -5'
24106 3' -59.5 NC_005262.1 + 32022 0.68 0.419222
Target:  5'- gACGA--UCGCGCGCGAuGCGgcGGa -3'
miRNA:   3'- aUGCUggAGCGCGCGCUcCGCuuCCg -5'
24106 3' -59.5 NC_005262.1 + 46627 0.68 0.419222
Target:  5'- cGCGuCCUCGCGCGCGGccuUGccGGCc -3'
miRNA:   3'- aUGCuGGAGCGCGCGCUcc-GCuuCCG- -5'
24106 3' -59.5 NC_005262.1 + 45777 0.68 0.437634
Target:  5'- -uCGGCaUCGCG-GCGAagGGCGgcGGCg -3'
miRNA:   3'- auGCUGgAGCGCgCGCU--CCGCuuCCG- -5'
24106 3' -59.5 NC_005262.1 + 47381 0.68 0.42745
Target:  5'- uUGCG-CCUCGCgGCGCaGAaucccGGCGGccggccgGGGCg -3'
miRNA:   3'- -AUGCuGGAGCG-CGCG-CU-----CCGCU-------UCCG- -5'
24106 3' -59.5 NC_005262.1 + 11626 0.68 0.437634
Target:  5'- cAUGcCCUCG-GCGuCGAGGCcGGGGUa -3'
miRNA:   3'- aUGCuGGAGCgCGC-GCUCCGcUUCCG- -5'
24106 3' -59.5 NC_005262.1 + 24731 0.68 0.392506
Target:  5'- cGCG-CUggCGCGCGCGAucGGCGugcGGCc -3'
miRNA:   3'- aUGCuGGa-GCGCGCGCU--CCGCuu-CCG- -5'
24106 3' -59.5 NC_005262.1 + 54404 0.68 0.401288
Target:  5'- gGCaACgUCGUGCGCaagcucgcgGAGGCGcAGGCc -3'
miRNA:   3'- aUGcUGgAGCGCGCG---------CUCCGCuUCCG- -5'
24106 3' -59.5 NC_005262.1 + 5076 0.68 0.437634
Target:  5'- gGCGGCggCGCGUGCGAccGGCuc-GGCg -3'
miRNA:   3'- aUGCUGgaGCGCGCGCU--CCGcuuCCG- -5'
24106 3' -59.5 NC_005262.1 + 63063 0.68 0.42837
Target:  5'- -cCGGCacgucaUCGCGgGCGAGuauGCGgcGGCg -3'
miRNA:   3'- auGCUGg-----AGCGCgCGCUC---CGCuuCCG- -5'
24106 3' -59.5 NC_005262.1 + 34844 0.68 0.42745
Target:  5'- gACuuCCUCGCGCGCGAGcacaUGAcccucaucucgugGGGCg -3'
miRNA:   3'- aUGcuGGAGCGCGCGCUCc---GCU-------------UCCG- -5'
24106 3' -59.5 NC_005262.1 + 17165 0.68 0.425613
Target:  5'- --aGGCCggcaaggcCGCGCGCGAGGaCGcgaccgcguucagcAAGGCc -3'
miRNA:   3'- augCUGGa-------GCGCGCGCUCC-GC--------------UUCCG- -5'
24106 3' -59.5 NC_005262.1 + 54760 0.68 0.419222
Target:  5'- aACGcACgUCGaCGC-CGAGGCGAccgagaAGGCc -3'
miRNA:   3'- aUGC-UGgAGC-GCGcGCUCCGCU------UCCG- -5'
24106 3' -59.5 NC_005262.1 + 36104 0.68 0.410194
Target:  5'- -uUGACCUgaucuucgaCGCuGCGCGAuacGGCG-AGGCg -3'
miRNA:   3'- auGCUGGA---------GCG-CGCGCU---CCGCuUCCG- -5'
24106 3' -59.5 NC_005262.1 + 25441 0.68 0.404836
Target:  5'- cUACGACaaccugcccgaggCGCuGCGCGAGGCGAugccGCu -3'
miRNA:   3'- -AUGCUGga-----------GCG-CGCGCUCCGCUuc--CG- -5'
24106 3' -59.5 NC_005262.1 + 4199 0.68 0.441372
Target:  5'- cACGACCacggccugaucguagUCGCGCGCGAuGUucuGGAGGa -3'
miRNA:   3'- aUGCUGG---------------AGCGCGCGCUcCG---CUUCCg -5'
24106 3' -59.5 NC_005262.1 + 19307 0.69 0.358652
Target:  5'- gACGugCUCgGCGaUGCGA-GUGAAGGUg -3'
miRNA:   3'- aUGCugGAG-CGC-GCGCUcCGCUUCCG- -5'
24106 3' -59.5 NC_005262.1 + 51074 0.69 0.358652
Target:  5'- cAgGugCUCGC-CGCGcAGGagGAAGGCa -3'
miRNA:   3'- aUgCugGAGCGcGCGC-UCCg-CUUCCG- -5'
24106 3' -59.5 NC_005262.1 + 47396 0.69 0.342509
Target:  5'- gGCGACCUCGaGCGCGAcGCGcAGaaaaGCa -3'
miRNA:   3'- aUGCUGGAGCgCGCGCUcCGCuUC----CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.