miRNA display CGI


Results 81 - 100 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24106 3' -59.5 NC_005262.1 + 40856 0.69 0.375321
Target:  5'- cACGccucCCUCGCGCG-GAgcauGGCGucGGCg -3'
miRNA:   3'- aUGCu---GGAGCGCGCgCU----CCGCuuCCG- -5'
24106 3' -59.5 NC_005262.1 + 40474 0.69 0.375321
Target:  5'- cGCGugCUCGUGCGCGGcGCcuugaugcgcuuGAuGGCg -3'
miRNA:   3'- aUGCugGAGCGCGCGCUcCG------------CUuCCG- -5'
24106 3' -59.5 NC_005262.1 + 36742 0.69 0.366922
Target:  5'- cACGAacgCguaGCGCGUGAGGuCGAuGGCg -3'
miRNA:   3'- aUGCUg--Gag-CGCGCGCUCC-GCUuCCG- -5'
24106 3' -59.5 NC_005262.1 + 988 0.69 0.342509
Target:  5'- gGCGACCUgCGgG-GCGGGGCGGuguAGaGCu -3'
miRNA:   3'- aUGCUGGA-GCgCgCGCUCCGCU---UC-CG- -5'
24106 3' -59.5 NC_005262.1 + 51074 0.69 0.358652
Target:  5'- cAgGugCUCGC-CGCGcAGGagGAAGGCa -3'
miRNA:   3'- aUgCugGAGCGcGCGC-UCCg-CUUCCG- -5'
24106 3' -59.5 NC_005262.1 + 19307 0.69 0.358652
Target:  5'- gACGugCUCgGCGaUGCGA-GUGAAGGUg -3'
miRNA:   3'- aUGCugGAG-CGC-GCGCUcCGCUUCCG- -5'
24106 3' -59.5 NC_005262.1 + 51196 0.69 0.357014
Target:  5'- gGCGGCC-CGCuggagccGCGCG-GGCGAugcugaucgcaccGGGCu -3'
miRNA:   3'- aUGCUGGaGCG-------CGCGCuCCGCU-------------UCCG- -5'
24106 3' -59.5 NC_005262.1 + 54557 0.69 0.350514
Target:  5'- aGCGACgUCGC-CGCGuucGCGAgcgAGGCg -3'
miRNA:   3'- aUGCUGgAGCGcGCGCuc-CGCU---UCCG- -5'
24106 3' -59.5 NC_005262.1 + 43829 0.69 0.350514
Target:  5'- cACGGCCgcgggccggcCGCGCGCGgcGGuGCGccGGCa -3'
miRNA:   3'- aUGCUGGa---------GCGCGCGC--UC-CGCuuCCG- -5'
24106 3' -59.5 NC_005262.1 + 4564 0.69 0.342509
Target:  5'- gGCGcAUCUCGCGCcaGCGGcGGCGcugcucGGGCg -3'
miRNA:   3'- aUGC-UGGAGCGCG--CGCU-CCGCu-----UCCG- -5'
24106 3' -59.5 NC_005262.1 + 47396 0.69 0.342509
Target:  5'- gGCGACCUCGaGCGCGAcGCGcAGaaaaGCa -3'
miRNA:   3'- aUGCUGGAGCgCGCGCUcCGCuUC----CG- -5'
24106 3' -59.5 NC_005262.1 + 61606 0.7 0.326895
Target:  5'- -uCGACCgagcagaagCGCGCGCGccugaAGGagcuCGAGGGCg -3'
miRNA:   3'- auGCUGGa--------GCGCGCGC-----UCC----GCUUCCG- -5'
24106 3' -59.5 NC_005262.1 + 61065 0.7 0.326895
Target:  5'- cGgGACCUCGagGCGCaGGGCGAGcGCu -3'
miRNA:   3'- aUgCUGGAGCg-CGCGcUCCGCUUcCG- -5'
24106 3' -59.5 NC_005262.1 + 51832 0.7 0.334635
Target:  5'- cGCGGCCgaCGUGCGCGAaGuGCuGAAGcGCg -3'
miRNA:   3'- aUGCUGGa-GCGCGCGCU-C-CG-CUUC-CG- -5'
24106 3' -59.5 NC_005262.1 + 41185 0.7 0.319289
Target:  5'- cGCGAUCgCGUGCGCGcccGGCGAccGCu -3'
miRNA:   3'- aUGCUGGaGCGCGCGCu--CCGCUucCG- -5'
24106 3' -59.5 NC_005262.1 + 49222 0.7 0.314789
Target:  5'- gGCGGCCUcggcggcgcgcagucCGCGCGCGAGGUcc--GCg -3'
miRNA:   3'- aUGCUGGA---------------GCGCGCGCUCCGcuucCG- -5'
24106 3' -59.5 NC_005262.1 + 22806 0.7 0.304477
Target:  5'- uUACGACCggcaUGUGgcucCGCGAcuacuucgcGGCGAAGGCg -3'
miRNA:   3'- -AUGCUGGa---GCGC----GCGCU---------CCGCUUCCG- -5'
24106 3' -59.5 NC_005262.1 + 19079 0.7 0.336983
Target:  5'- cGCGGCCgagcugcauuuccUCGCGCGC--GGCGAugccacguucggaucGGGCg -3'
miRNA:   3'- aUGCUGG-------------AGCGCGCGcuCCGCU---------------UCCG- -5'
24106 3' -59.5 NC_005262.1 + 34986 0.7 0.326895
Target:  5'- cGCGAgCUCGagauGCGCG-GGCGcGAGGUc -3'
miRNA:   3'- aUGCUgGAGCg---CGCGCuCCGC-UUCCG- -5'
24106 3' -59.5 NC_005262.1 + 14032 0.7 0.326895
Target:  5'- aGCGgccggaGCCUCGgGCGCG-GGCGccgccGGCg -3'
miRNA:   3'- aUGC------UGGAGCgCGCGCuCCGCuu---CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.