miRNA display CGI


Results 61 - 80 of 142 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24106 3' -59.5 NC_005262.1 + 54557 0.69 0.350514
Target:  5'- aGCGACgUCGC-CGCGuucGCGAgcgAGGCg -3'
miRNA:   3'- aUGCUGgAGCGcGCGCuc-CGCU---UCCG- -5'
24106 3' -59.5 NC_005262.1 + 43829 0.69 0.350514
Target:  5'- cACGGCCgcgggccggcCGCGCGCGgcGGuGCGccGGCa -3'
miRNA:   3'- aUGCUGGa---------GCGCGCGC--UC-CGCuuCCG- -5'
24106 3' -59.5 NC_005262.1 + 4564 0.69 0.342509
Target:  5'- gGCGcAUCUCGCGCcaGCGGcGGCGcugcucGGGCg -3'
miRNA:   3'- aUGC-UGGAGCGCG--CGCU-CCGCu-----UCCG- -5'
24106 3' -59.5 NC_005262.1 + 988 0.69 0.342509
Target:  5'- gGCGACCUgCGgG-GCGGGGCGGuguAGaGCu -3'
miRNA:   3'- aUGCUGGA-GCgCgCGCUCCGCU---UC-CG- -5'
24106 3' -59.5 NC_005262.1 + 47396 0.69 0.342509
Target:  5'- gGCGACCUCGaGCGCGAcGCGcAGaaaaGCa -3'
miRNA:   3'- aUGCUGGAGCgCGCGCUcCGCuUC----CG- -5'
24106 3' -59.5 NC_005262.1 + 46627 0.68 0.419222
Target:  5'- cGCGuCCUCGCGCGCGGccuUGccGGCc -3'
miRNA:   3'- aUGCuGGAGCGCGCGCUcc-GCuuCCG- -5'
24106 3' -59.5 NC_005262.1 + 32022 0.68 0.419222
Target:  5'- gACGA--UCGCGCGCGAuGCGgcGGa -3'
miRNA:   3'- aUGCUggAGCGCGCGCUcCGCuuCCg -5'
24106 3' -59.5 NC_005262.1 + 38691 0.68 0.392506
Target:  5'- aACGAuUCUUGCuGUGCugcccGGCGAAGGCa -3'
miRNA:   3'- aUGCU-GGAGCG-CGCGcu---CCGCUUCCG- -5'
24106 3' -59.5 NC_005262.1 + 16407 0.68 0.437634
Target:  5'- -cCGGCCgccgggauucUGCGcCGCGAGGCGcAAGGa -3'
miRNA:   3'- auGCUGGa---------GCGC-GCGCUCCGC-UUCCg -5'
24106 3' -59.5 NC_005262.1 + 12990 0.68 0.392506
Target:  5'- cGCGACC-CGCGCGUGAcgugGGUGuacGCg -3'
miRNA:   3'- aUGCUGGaGCGCGCGCU----CCGCuucCG- -5'
24106 3' -59.5 NC_005262.1 + 45777 0.68 0.437634
Target:  5'- -uCGGCaUCGCG-GCGAagGGCGgcGGCg -3'
miRNA:   3'- auGCUGgAGCGCgCGCU--CCGCuuCCG- -5'
24106 3' -59.5 NC_005262.1 + 5076 0.68 0.437634
Target:  5'- gGCGGCggCGCGUGCGAccGGCuc-GGCg -3'
miRNA:   3'- aUGCUGgaGCGCGCGCU--CCGcuuCCG- -5'
24106 3' -59.5 NC_005262.1 + 63063 0.68 0.42837
Target:  5'- -cCGGCacgucaUCGCGgGCGAGuauGCGgcGGCg -3'
miRNA:   3'- auGCUGg-----AGCGCgCGCUC---CGCuuCCG- -5'
24106 3' -59.5 NC_005262.1 + 34844 0.68 0.42745
Target:  5'- gACuuCCUCGCGCGCGAGcacaUGAcccucaucucgugGGGCg -3'
miRNA:   3'- aUGcuGGAGCGCGCGCUCc---GCU-------------UCCG- -5'
24106 3' -59.5 NC_005262.1 + 17165 0.68 0.425613
Target:  5'- --aGGCCggcaaggcCGCGCGCGAGGaCGcgaccgcguucagcAAGGCc -3'
miRNA:   3'- augCUGGa-------GCGCGCGCUCC-GC--------------UUCCG- -5'
24106 3' -59.5 NC_005262.1 + 54760 0.68 0.419222
Target:  5'- aACGcACgUCGaCGC-CGAGGCGAccgagaAGGCc -3'
miRNA:   3'- aUGC-UGgAGC-GCGcGCUCCGCU------UCCG- -5'
24106 3' -59.5 NC_005262.1 + 43866 0.68 0.410194
Target:  5'- cAgGACCUCG-GCGCGAucgcgcgcauGGCcgacaugaagucGAAGGCg -3'
miRNA:   3'- aUgCUGGAGCgCGCGCU----------CCG------------CUUCCG- -5'
24106 3' -59.5 NC_005262.1 + 36104 0.68 0.410194
Target:  5'- -uUGACCUgaucuucgaCGCuGCGCGAuacGGCG-AGGCg -3'
miRNA:   3'- auGCUGGA---------GCG-CGCGCU---CCGCuUCCG- -5'
24106 3' -59.5 NC_005262.1 + 25441 0.68 0.404836
Target:  5'- cUACGACaaccugcccgaggCGCuGCGCGAGGCGAugccGCu -3'
miRNA:   3'- -AUGCUGga-----------GCG-CGCGCUCCGCUuc--CG- -5'
24106 3' -59.5 NC_005262.1 + 54404 0.68 0.401288
Target:  5'- gGCaACgUCGUGCGCaagcucgcgGAGGCGcAGGCc -3'
miRNA:   3'- aUGcUGgAGCGCGCG---------CUCCGCuUCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.