miRNA display CGI


Results 81 - 100 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24106 3' -59.5 NC_005262.1 + 4199 0.68 0.441372
Target:  5'- cACGACCacggccugaucguagUCGCGCGCGAuGUucuGGAGGa -3'
miRNA:   3'- aUGCUGG---------------AGCGCGCGCUcCG---CUUCCg -5'
24106 3' -59.5 NC_005262.1 + 11626 0.68 0.437634
Target:  5'- cAUGcCCUCG-GCGuCGAGGCcGGGGUa -3'
miRNA:   3'- aUGCuGGAGCgCGC-GCUCCGcUUCCG- -5'
24106 3' -59.5 NC_005262.1 + 9232 0.68 0.42837
Target:  5'- aGCG-CCUCGCuCGCGAacgcGGCGAcgucgcuGGCc -3'
miRNA:   3'- aUGCuGGAGCGcGCGCU----CCGCUu------CCG- -5'
24106 3' -59.5 NC_005262.1 + 47381 0.68 0.42745
Target:  5'- uUGCG-CCUCGCgGCGCaGAaucccGGCGGccggccgGGGCg -3'
miRNA:   3'- -AUGCuGGAGCG-CGCG-CU-----CCGCU-------UCCG- -5'
24106 3' -59.5 NC_005262.1 + 46627 0.68 0.419222
Target:  5'- cGCGuCCUCGCGCGCGGccuUGccGGCc -3'
miRNA:   3'- aUGCuGGAGCGCGCGCUcc-GCuuCCG- -5'
24106 3' -59.5 NC_005262.1 + 20222 0.68 0.401288
Target:  5'- cGCuGACCUCGaccucccacgucUGCGCGAGGaaucCGGAcGGCa -3'
miRNA:   3'- aUG-CUGGAGC------------GCGCGCUCC----GCUU-CCG- -5'
24106 3' -59.5 NC_005262.1 + 32022 0.68 0.419222
Target:  5'- gACGA--UCGCGCGCGAuGCGgcGGa -3'
miRNA:   3'- aUGCUggAGCGCGCGCUcCGCuuCCg -5'
24106 3' -59.5 NC_005262.1 + 33520 0.67 0.456502
Target:  5'- aACGGCCUgGa-CGaCGAGGCGAucGCg -3'
miRNA:   3'- aUGCUGGAgCgcGC-GCUCCGCUucCG- -5'
24106 3' -59.5 NC_005262.1 + 4154 0.67 0.495491
Target:  5'- gGCGACCa---GCGCGAGGagaGAcuGGCg -3'
miRNA:   3'- aUGCUGGagcgCGCGCUCCg--CUu-CCG- -5'
24106 3' -59.5 NC_005262.1 + 37739 0.67 0.482647
Target:  5'- gACGGCuugaugcgccccugCUUGCGCGcCGcGGCGAgcugcuGGGCg -3'
miRNA:   3'- aUGCUG--------------GAGCGCGC-GCuCCGCU------UCCG- -5'
24106 3' -59.5 NC_005262.1 + 28023 0.67 0.479705
Target:  5'- -uCGAacgCUCGCGCGCG-GGUGAAcgaaaaugccgccuuGGCc -3'
miRNA:   3'- auGCUg--GAGCGCGCGCuCCGCUU---------------CCG- -5'
24106 3' -59.5 NC_005262.1 + 21113 0.67 0.475798
Target:  5'- cUGgGGCCaCGCGUGCG-GGCGccacGGCu -3'
miRNA:   3'- -AUgCUGGaGCGCGCGCuCCGCuu--CCG- -5'
24106 3' -59.5 NC_005262.1 + 61551 0.67 0.475798
Target:  5'- gGCGAUCUCG-GCGauccgggaCGAGGCGGugacGGUg -3'
miRNA:   3'- aUGCUGGAGCgCGC--------GCUCCGCUu---CCG- -5'
24106 3' -59.5 NC_005262.1 + 35636 0.67 0.495491
Target:  5'- aACGGCa-CGCG-GCG-GGCGAuGGGCu -3'
miRNA:   3'- aUGCUGgaGCGCgCGCuCCGCU-UCCG- -5'
24106 3' -59.5 NC_005262.1 + 44937 0.67 0.499474
Target:  5'- cUACGACagccccgaGCGUcaggagcagauggccGcCGAGGCGAGGGCc -3'
miRNA:   3'- -AUGCUGgag-----CGCG---------------C-GCUCCGCUUCCG- -5'
24106 3' -59.5 NC_005262.1 + 11469 0.67 0.466098
Target:  5'- cUACcGCgCUCGCGCGCGAGcacauGGGCc -3'
miRNA:   3'- -AUGcUG-GAGCGCGCGCUCcgcu-UCCG- -5'
24106 3' -59.5 NC_005262.1 + 22150 0.67 0.455548
Target:  5'- cGCGGCUgcccgcaUCGC-CGagcugGAGGCGAAGGUc -3'
miRNA:   3'- aUGCUGG-------AGCGcGCg----CUCCGCUUCCG- -5'
24106 3' -59.5 NC_005262.1 + 8270 0.67 0.454595
Target:  5'- aGCGGCCgaggaagcugccCGCGUcgcucGCGAGGCGGccaagaAGGUg -3'
miRNA:   3'- aUGCUGGa-----------GCGCG-----CGCUCCGCU------UCCG- -5'
24106 3' -59.5 NC_005262.1 + 46920 0.67 0.466098
Target:  5'- gUGCGGCC-CG-GCGCGcGGCc-GGGCg -3'
miRNA:   3'- -AUGCUGGaGCgCGCGCuCCGcuUCCG- -5'
24106 3' -59.5 NC_005262.1 + 10823 0.67 0.469966
Target:  5'- cACGACCagCGCauGCGCGuccgccgcgcucaggGGGCGGcaugagugaGGGCg -3'
miRNA:   3'- aUGCUGGa-GCG--CGCGC---------------UCCGCU---------UCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.