miRNA display CGI


Results 101 - 120 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24106 3' -59.5 NC_005262.1 + 61551 0.67 0.475798
Target:  5'- gGCGAUCUCG-GCGauccgggaCGAGGCGGugacGGUg -3'
miRNA:   3'- aUGCUGGAGCgCGC--------GCUCCGCUu---CCG- -5'
24106 3' -59.5 NC_005262.1 + 10823 0.67 0.469966
Target:  5'- cACGACCagCGCauGCGCGuccgccgcgcucaggGGGCGGcaugagugaGGGCg -3'
miRNA:   3'- aUGCUGGa-GCG--CGCGC---------------UCCGCU---------UCCG- -5'
24106 3' -59.5 NC_005262.1 + 33520 0.67 0.456502
Target:  5'- aACGGCCUgGa-CGaCGAGGCGAucGCg -3'
miRNA:   3'- aUGCUGGAgCgcGC-GCUCCGCUucCG- -5'
24106 3' -59.5 NC_005262.1 + 22150 0.67 0.455548
Target:  5'- cGCGGCUgcccgcaUCGC-CGagcugGAGGCGAAGGUc -3'
miRNA:   3'- aUGCUGG-------AGCGcGCg----CUCCGCUUCCG- -5'
24106 3' -59.5 NC_005262.1 + 8270 0.67 0.454595
Target:  5'- aGCGGCCgaggaagcugccCGCGUcgcucGCGAGGCGGccaagaAGGUg -3'
miRNA:   3'- aUGCUGGa-----------GCGCG-----CGCUCCGCU------UCCG- -5'
24106 3' -59.5 NC_005262.1 + 8786 0.67 0.468997
Target:  5'- -cCGACCgCGUGCGCGAGGUacaugucgccuuccuGAAugccgcgccagauGGCg -3'
miRNA:   3'- auGCUGGaGCGCGCGCUCCG---------------CUU-------------CCG- -5'
24106 3' -59.5 NC_005262.1 + 46990 0.66 0.505475
Target:  5'- gGCGAaggcaUgGCGCGCGAcgcagaugGGCGAcaucgaGGGCg -3'
miRNA:   3'- aUGCUgg---AgCGCGCGCU--------CCGCU------UCCG- -5'
24106 3' -59.5 NC_005262.1 + 17788 0.66 0.556569
Target:  5'- cGCGacGCCUUGCGCGUGcAGgaacGCGAAcacgcGGCu -3'
miRNA:   3'- aUGC--UGGAGCGCGCGC-UC----CGCUU-----CCG- -5'
24106 3' -59.5 NC_005262.1 + 50225 0.66 0.505475
Target:  5'- cACGACCgaaCGC-CGCaAGGUGucGGCc -3'
miRNA:   3'- aUGCUGGa--GCGcGCGcUCCGCuuCCG- -5'
24106 3' -59.5 NC_005262.1 + 52387 0.66 0.505475
Target:  5'- gGCGGCCcggCGCgGCGCGGcuucGGCGuGGaGCc -3'
miRNA:   3'- aUGCUGGa--GCG-CGCGCU----CCGCuUC-CG- -5'
24106 3' -59.5 NC_005262.1 + 38338 0.66 0.545181
Target:  5'- aGCGgcaucGCCUCGCGCaGCGccucGGGCaGGuugucguAGGCg -3'
miRNA:   3'- aUGC-----UGGAGCGCG-CGC----UCCG-CU-------UCCG- -5'
24106 3' -59.5 NC_005262.1 + 19924 0.66 0.505475
Target:  5'- -uCGGCCaUGCGCGCGAucGCGccGAGGUc -3'
miRNA:   3'- auGCUGGaGCGCGCGCUc-CGC--UUCCG- -5'
24106 3' -59.5 NC_005262.1 + 30182 0.66 0.515545
Target:  5'- gGCGGCUUuuccUGCGaCGuCGGGGCGAcuGCg -3'
miRNA:   3'- aUGCUGGA----GCGC-GC-GCUCCGCUucCG- -5'
24106 3' -59.5 NC_005262.1 + 33077 0.66 0.525695
Target:  5'- aGCuucuCCUCGUGCGCuucGGGGUccguuuccuGGAGGCg -3'
miRNA:   3'- aUGcu--GGAGCGCGCG---CUCCG---------CUUCCG- -5'
24106 3' -59.5 NC_005262.1 + 48993 0.66 0.525695
Target:  5'- gAUGAUCUCGgaaaCGCGCGAGaUGGacAGGCc -3'
miRNA:   3'- aUGCUGGAGC----GCGCGCUCcGCU--UCCG- -5'
24106 3' -59.5 NC_005262.1 + 4646 0.66 0.525695
Target:  5'- cGCGuCCUCcaUGCGCGcGGCGAcgcGGCc -3'
miRNA:   3'- aUGCuGGAGc-GCGCGCuCCGCUu--CCG- -5'
24106 3' -59.5 NC_005262.1 + 29708 0.66 0.534894
Target:  5'- -uUGACCacguuuuUCGCGCGCGcGGCGugccaguccGGGUu -3'
miRNA:   3'- auGCUGG-------AGCGCGCGCuCCGCu--------UCCG- -5'
24106 3' -59.5 NC_005262.1 + 27932 0.66 0.53592
Target:  5'- gUGCGcGCgUCGCGCGCacaaacaucuGGGCGGucgcGGCg -3'
miRNA:   3'- -AUGC-UGgAGCGCGCGc---------UCCGCUu---CCG- -5'
24106 3' -59.5 NC_005262.1 + 57549 0.66 0.53592
Target:  5'- gGCGGCaaagacCGUGCGCGcGGCGGGcuucagcaucucGGCg -3'
miRNA:   3'- aUGCUGga----GCGCGCGCuCCGCUU------------CCG- -5'
24106 3' -59.5 NC_005262.1 + 34682 0.66 0.545181
Target:  5'- -uCGGCCuUCGUGCGCGugaugucguucucGGGC--AGGCc -3'
miRNA:   3'- auGCUGG-AGCGCGCGC-------------UCCGcuUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.