miRNA display CGI


Results 61 - 80 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24106 3' -59.5 NC_005262.1 + 19307 0.69 0.358652
Target:  5'- gACGugCUCgGCGaUGCGA-GUGAAGGUg -3'
miRNA:   3'- aUGCugGAG-CGC-GCGCUcCGCUUCCG- -5'
24106 3' -59.5 NC_005262.1 + 36742 0.69 0.366922
Target:  5'- cACGAacgCguaGCGCGUGAGGuCGAuGGCg -3'
miRNA:   3'- aUGCUg--Gag-CGCGCGCUCC-GCUuCCG- -5'
24106 3' -59.5 NC_005262.1 + 40856 0.69 0.375321
Target:  5'- cACGccucCCUCGCGCG-GAgcauGGCGucGGCg -3'
miRNA:   3'- aUGCu---GGAGCGCGCgCU----CCGCuuCCG- -5'
24106 3' -59.5 NC_005262.1 + 40474 0.69 0.375321
Target:  5'- cGCGugCUCGUGCGCGGcGCcuugaugcgcuuGAuGGCg -3'
miRNA:   3'- aUGCugGAGCGCGCGCUcCG------------CUuCCG- -5'
24106 3' -59.5 NC_005262.1 + 17261 0.69 0.381278
Target:  5'- gGCGGCCggCGCcgcgcugggcugcuGCGCG-GGCaGGGGCg -3'
miRNA:   3'- aUGCUGGa-GCG--------------CGCGCuCCGcUUCCG- -5'
24106 3' -59.5 NC_005262.1 + 52790 0.68 0.392506
Target:  5'- aGCcGCCUCGCucgucagccGUGCGAGcGCGAccGGCg -3'
miRNA:   3'- aUGcUGGAGCG---------CGCGCUC-CGCUu-CCG- -5'
24106 3' -59.5 NC_005262.1 + 12990 0.68 0.392506
Target:  5'- cGCGACC-CGCGCGUGAcgugGGUGuacGCg -3'
miRNA:   3'- aUGCUGGaGCGCGCGCU----CCGCuucCG- -5'
24106 3' -59.5 NC_005262.1 + 24731 0.68 0.392506
Target:  5'- cGCG-CUggCGCGCGCGAucGGCGugcGGCc -3'
miRNA:   3'- aUGCuGGa-GCGCGCGCU--CCGCuu-CCG- -5'
24106 3' -59.5 NC_005262.1 + 38691 0.68 0.392506
Target:  5'- aACGAuUCUUGCuGUGCugcccGGCGAAGGCa -3'
miRNA:   3'- aUGCU-GGAGCG-CGCGcu---CCGCUUCCG- -5'
24106 3' -59.5 NC_005262.1 + 20222 0.68 0.401288
Target:  5'- cGCuGACCUCGaccucccacgucUGCGCGAGGaaucCGGAcGGCa -3'
miRNA:   3'- aUG-CUGGAGC------------GCGCGCUCC----GCUU-CCG- -5'
24106 3' -59.5 NC_005262.1 + 54404 0.68 0.401288
Target:  5'- gGCaACgUCGUGCGCaagcucgcgGAGGCGcAGGCc -3'
miRNA:   3'- aUGcUGgAGCGCGCG---------CUCCGCuUCCG- -5'
24106 3' -59.5 NC_005262.1 + 25441 0.68 0.404836
Target:  5'- cUACGACaaccugcccgaggCGCuGCGCGAGGCGAugccGCu -3'
miRNA:   3'- -AUGCUGga-----------GCG-CGCGCUCCGCUuc--CG- -5'
24106 3' -59.5 NC_005262.1 + 43866 0.68 0.410194
Target:  5'- cAgGACCUCG-GCGCGAucgcgcgcauGGCcgacaugaagucGAAGGCg -3'
miRNA:   3'- aUgCUGGAGCgCGCGCU----------CCG------------CUUCCG- -5'
24106 3' -59.5 NC_005262.1 + 36104 0.68 0.410194
Target:  5'- -uUGACCUgaucuucgaCGCuGCGCGAuacGGCG-AGGCg -3'
miRNA:   3'- auGCUGGA---------GCG-CGCGCU---CCGCuUCCG- -5'
24106 3' -59.5 NC_005262.1 + 32022 0.68 0.419222
Target:  5'- gACGA--UCGCGCGCGAuGCGgcGGa -3'
miRNA:   3'- aUGCUggAGCGCGCGCUcCGCuuCCg -5'
24106 3' -59.5 NC_005262.1 + 46627 0.68 0.419222
Target:  5'- cGCGuCCUCGCGCGCGGccuUGccGGCc -3'
miRNA:   3'- aUGCuGGAGCGCGCGCUcc-GCuuCCG- -5'
24106 3' -59.5 NC_005262.1 + 54760 0.68 0.419222
Target:  5'- aACGcACgUCGaCGC-CGAGGCGAccgagaAGGCc -3'
miRNA:   3'- aUGC-UGgAGC-GCGcGCUCCGCU------UCCG- -5'
24106 3' -59.5 NC_005262.1 + 17165 0.68 0.425613
Target:  5'- --aGGCCggcaaggcCGCGCGCGAGGaCGcgaccgcguucagcAAGGCc -3'
miRNA:   3'- augCUGGa-------GCGCGCGCUCC-GC--------------UUCCG- -5'
24106 3' -59.5 NC_005262.1 + 47381 0.68 0.42745
Target:  5'- uUGCG-CCUCGCgGCGCaGAaucccGGCGGccggccgGGGCg -3'
miRNA:   3'- -AUGCuGGAGCG-CGCG-CU-----CCGCU-------UCCG- -5'
24106 3' -59.5 NC_005262.1 + 34844 0.68 0.42745
Target:  5'- gACuuCCUCGCGCGCGAGcacaUGAcccucaucucgugGGGCg -3'
miRNA:   3'- aUGcuGGAGCGCGCGCUCc---GCU-------------UCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.