Results 81 - 100 of 142 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24106 | 3' | -59.5 | NC_005262.1 | + | 36742 | 0.69 | 0.366922 |
Target: 5'- cACGAacgCguaGCGCGUGAGGuCGAuGGCg -3' miRNA: 3'- aUGCUg--Gag-CGCGCGCUCC-GCUuCCG- -5' |
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24106 | 3' | -59.5 | NC_005262.1 | + | 51074 | 0.69 | 0.358652 |
Target: 5'- cAgGugCUCGC-CGCGcAGGagGAAGGCa -3' miRNA: 3'- aUgCugGAGCGcGCGC-UCCg-CUUCCG- -5' |
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24106 | 3' | -59.5 | NC_005262.1 | + | 19307 | 0.69 | 0.358652 |
Target: 5'- gACGugCUCgGCGaUGCGA-GUGAAGGUg -3' miRNA: 3'- aUGCugGAG-CGC-GCGCUcCGCUUCCG- -5' |
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24106 | 3' | -59.5 | NC_005262.1 | + | 51196 | 0.69 | 0.357014 |
Target: 5'- gGCGGCC-CGCuggagccGCGCG-GGCGAugcugaucgcaccGGGCu -3' miRNA: 3'- aUGCUGGaGCG-------CGCGCuCCGCU-------------UCCG- -5' |
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24106 | 3' | -59.5 | NC_005262.1 | + | 43829 | 0.69 | 0.350514 |
Target: 5'- cACGGCCgcgggccggcCGCGCGCGgcGGuGCGccGGCa -3' miRNA: 3'- aUGCUGGa---------GCGCGCGC--UC-CGCuuCCG- -5' |
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24106 | 3' | -59.5 | NC_005262.1 | + | 46798 | 0.69 | 0.350514 |
Target: 5'- cACGACgagCGCGCGCucGGCcGgcGGCa -3' miRNA: 3'- aUGCUGga-GCGCGCGcuCCG-CuuCCG- -5' |
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24106 | 3' | -59.5 | NC_005262.1 | + | 54557 | 0.69 | 0.350514 |
Target: 5'- aGCGACgUCGC-CGCGuucGCGAgcgAGGCg -3' miRNA: 3'- aUGCUGgAGCGcGCGCuc-CGCU---UCCG- -5' |
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24106 | 3' | -59.5 | NC_005262.1 | + | 4564 | 0.69 | 0.342509 |
Target: 5'- gGCGcAUCUCGCGCcaGCGGcGGCGcugcucGGGCg -3' miRNA: 3'- aUGC-UGGAGCGCG--CGCU-CCGCu-----UCCG- -5' |
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24106 | 3' | -59.5 | NC_005262.1 | + | 988 | 0.69 | 0.342509 |
Target: 5'- gGCGACCUgCGgG-GCGGGGCGGuguAGaGCu -3' miRNA: 3'- aUGCUGGA-GCgCgCGCUCCGCU---UC-CG- -5' |
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24106 | 3' | -59.5 | NC_005262.1 | + | 14236 | 0.69 | 0.342509 |
Target: 5'- cACGGCCUCGUucuGCGCGAccuGCuGGAGcGCg -3' miRNA: 3'- aUGCUGGAGCG---CGCGCUc--CG-CUUC-CG- -5' |
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24106 | 3' | -59.5 | NC_005262.1 | + | 47396 | 0.69 | 0.342509 |
Target: 5'- gGCGACCUCGaGCGCGAcGCGcAGaaaaGCa -3' miRNA: 3'- aUGCUGGAGCgCGCGCUcCGCuUC----CG- -5' |
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24106 | 3' | -59.5 | NC_005262.1 | + | 19079 | 0.7 | 0.336983 |
Target: 5'- cGCGGCCgagcugcauuuccUCGCGCGC--GGCGAugccacguucggaucGGGCg -3' miRNA: 3'- aUGCUGG-------------AGCGCGCGcuCCGCU---------------UCCG- -5' |
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24106 | 3' | -59.5 | NC_005262.1 | + | 51832 | 0.7 | 0.334635 |
Target: 5'- cGCGGCCgaCGUGCGCGAaGuGCuGAAGcGCg -3' miRNA: 3'- aUGCUGGa-GCGCGCGCU-C-CG-CUUC-CG- -5' |
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24106 | 3' | -59.5 | NC_005262.1 | + | 61606 | 0.7 | 0.326895 |
Target: 5'- -uCGACCgagcagaagCGCGCGCGccugaAGGagcuCGAGGGCg -3' miRNA: 3'- auGCUGGa--------GCGCGCGC-----UCC----GCUUCCG- -5' |
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24106 | 3' | -59.5 | NC_005262.1 | + | 34986 | 0.7 | 0.326895 |
Target: 5'- cGCGAgCUCGagauGCGCG-GGCGcGAGGUc -3' miRNA: 3'- aUGCUgGAGCg---CGCGCuCCGC-UUCCG- -5' |
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24106 | 3' | -59.5 | NC_005262.1 | + | 61065 | 0.7 | 0.326895 |
Target: 5'- cGgGACCUCGagGCGCaGGGCGAGcGCu -3' miRNA: 3'- aUgCUGGAGCg-CGCGcUCCGCUUcCG- -5' |
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24106 | 3' | -59.5 | NC_005262.1 | + | 14032 | 0.7 | 0.326895 |
Target: 5'- aGCGgccggaGCCUCGgGCGCG-GGCGccgccGGCg -3' miRNA: 3'- aUGC------UGGAGCgCGCGCuCCGCuu---CCG- -5' |
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24106 | 3' | -59.5 | NC_005262.1 | + | 24164 | 0.7 | 0.319289 |
Target: 5'- ---uGCCUucaCGCGCGCGAGGgcgucgguagaCGAAGGUg -3' miRNA: 3'- augcUGGA---GCGCGCGCUCC-----------GCUUCCG- -5' |
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24106 | 3' | -59.5 | NC_005262.1 | + | 41185 | 0.7 | 0.319289 |
Target: 5'- cGCGAUCgCGUGCGCGcccGGCGAccGCu -3' miRNA: 3'- aUGCUGGaGCGCGCGCu--CCGCUucCG- -5' |
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24106 | 3' | -59.5 | NC_005262.1 | + | 49222 | 0.7 | 0.314789 |
Target: 5'- gGCGGCCUcggcggcgcgcagucCGCGCGCGAGGUcc--GCg -3' miRNA: 3'- aUGCUGGA---------------GCGCGCGCUCCGcuucCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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