miRNA display CGI


Results 41 - 60 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24106 3' -59.5 NC_005262.1 + 19924 0.66 0.505475
Target:  5'- -uCGGCCaUGCGCGCGAucGCGccGAGGUc -3'
miRNA:   3'- auGCUGGaGCGCGCGCUc-CGC--UUCCG- -5'
24106 3' -59.5 NC_005262.1 + 20222 0.68 0.401288
Target:  5'- cGCuGACCUCGaccucccacgucUGCGCGAGGaaucCGGAcGGCa -3'
miRNA:   3'- aUG-CUGGAGC------------GCGCGCUCC----GCUU-CCG- -5'
24106 3' -59.5 NC_005262.1 + 21113 0.67 0.475798
Target:  5'- cUGgGGCCaCGCGUGCG-GGCGccacGGCu -3'
miRNA:   3'- -AUgCUGGaGCGCGCGCuCCGCuu--CCG- -5'
24106 3' -59.5 NC_005262.1 + 22150 0.67 0.455548
Target:  5'- cGCGGCUgcccgcaUCGC-CGagcugGAGGCGAAGGUc -3'
miRNA:   3'- aUGCUGG-------AGCGcGCg----CUCCGCUUCCG- -5'
24106 3' -59.5 NC_005262.1 + 22806 0.7 0.304477
Target:  5'- uUACGACCggcaUGUGgcucCGCGAcuacuucgcGGCGAAGGCg -3'
miRNA:   3'- -AUGCUGGa---GCGC----GCGCU---------CCGCUUCCG- -5'
24106 3' -59.5 NC_005262.1 + 23353 0.84 0.036636
Target:  5'- cACGGCCggcgugaaGCGCGCGGcGGCGAAGGCc -3'
miRNA:   3'- aUGCUGGag------CGCGCGCU-CCGCUUCCG- -5'
24106 3' -59.5 NC_005262.1 + 23562 0.66 0.525695
Target:  5'- aACcGCCcgcCGCGCGCG-GGCGcAGGa -3'
miRNA:   3'- aUGcUGGa--GCGCGCGCuCCGCuUCCg -5'
24106 3' -59.5 NC_005262.1 + 24164 0.7 0.319289
Target:  5'- ---uGCCUucaCGCGCGCGAGGgcgucgguagaCGAAGGUg -3'
miRNA:   3'- augcUGGA---GCGCGCGCUCC-----------GCUUCCG- -5'
24106 3' -59.5 NC_005262.1 + 24731 0.68 0.392506
Target:  5'- cGCG-CUggCGCGCGCGAucGGCGugcGGCc -3'
miRNA:   3'- aUGCuGGa-GCGCGCGCU--CCGCuu-CCG- -5'
24106 3' -59.5 NC_005262.1 + 25441 0.68 0.404836
Target:  5'- cUACGACaaccugcccgaggCGCuGCGCGAGGCGAugccGCu -3'
miRNA:   3'- -AUGCUGga-----------GCG-CGCGCUCCGCUuc--CG- -5'
24106 3' -59.5 NC_005262.1 + 26556 0.66 0.556569
Target:  5'- aGCGGCCgacgCGCuGCGCcAGuucGCGcAGGCa -3'
miRNA:   3'- aUGCUGGa---GCG-CGCGcUC---CGCuUCCG- -5'
24106 3' -59.5 NC_005262.1 + 27932 0.66 0.53592
Target:  5'- gUGCGcGCgUCGCGCGCacaaacaucuGGGCGGucgcGGCg -3'
miRNA:   3'- -AUGC-UGgAGCGCGCGc---------UCCGCUu---CCG- -5'
24106 3' -59.5 NC_005262.1 + 28023 0.67 0.479705
Target:  5'- -uCGAacgCUCGCGCGCG-GGUGAAcgaaaaugccgccuuGGCc -3'
miRNA:   3'- auGCUg--GAGCGCGCGCuCCGCUU---------------CCG- -5'
24106 3' -59.5 NC_005262.1 + 28953 0.8 0.069826
Target:  5'- cAUGugCUCGCGCGCGAGGaaguCGggGaGCu -3'
miRNA:   3'- aUGCugGAGCGCGCGCUCC----GCuuC-CG- -5'
24106 3' -59.5 NC_005262.1 + 29415 0.74 0.179895
Target:  5'- cGCGACgCUCGaggaGCaGC-AGGCGAAGGCc -3'
miRNA:   3'- aUGCUG-GAGCg---CG-CGcUCCGCUUCCG- -5'
24106 3' -59.5 NC_005262.1 + 29453 0.73 0.189482
Target:  5'- cUGCGGCagaggCGCagguCGcCGAGGCGAAGGCg -3'
miRNA:   3'- -AUGCUGga---GCGc---GC-GCUCCGCUUCCG- -5'
24106 3' -59.5 NC_005262.1 + 29708 0.66 0.534894
Target:  5'- -uUGACCacguuuuUCGCGCGCGcGGCGugccaguccGGGUu -3'
miRNA:   3'- auGCUGG-------AGCGCGCGCuCCGCu--------UCCG- -5'
24106 3' -59.5 NC_005262.1 + 29947 0.8 0.067912
Target:  5'- gACGACCcggaCGCGgGCGGcGGCGAAGGUg -3'
miRNA:   3'- aUGCUGGa---GCGCgCGCU-CCGCUUCCG- -5'
24106 3' -59.5 NC_005262.1 + 30182 0.66 0.515545
Target:  5'- gGCGGCUUuuccUGCGaCGuCGGGGCGAcuGCg -3'
miRNA:   3'- aUGCUGGA----GCGC-GC-GCUCCGCUucCG- -5'
24106 3' -59.5 NC_005262.1 + 32022 0.68 0.419222
Target:  5'- gACGA--UCGCGCGCGAuGCGgcGGa -3'
miRNA:   3'- aUGCUggAGCGCGCGCUcCGCuuCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.