miRNA display CGI


Results 61 - 80 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24106 3' -59.5 NC_005262.1 + 32283 0.66 0.515545
Target:  5'- aACGAUUaCG-GCGCGGGcGCGAacgucgAGGCa -3'
miRNA:   3'- aUGCUGGaGCgCGCGCUC-CGCU------UCCG- -5'
24106 3' -59.5 NC_005262.1 + 33019 0.73 0.215428
Target:  5'- gGCu-CCUUaGcCGCGCGAGGCGAgguAGGCa -3'
miRNA:   3'- aUGcuGGAG-C-GCGCGCUCCGCU---UCCG- -5'
24106 3' -59.5 NC_005262.1 + 33077 0.66 0.525695
Target:  5'- aGCuucuCCUCGUGCGCuucGGGGUccguuuccuGGAGGCg -3'
miRNA:   3'- aUGcu--GGAGCGCGCG---CUCCG---------CUUCCG- -5'
24106 3' -59.5 NC_005262.1 + 33520 0.67 0.456502
Target:  5'- aACGGCCUgGa-CGaCGAGGCGAucGCg -3'
miRNA:   3'- aUGCUGGAgCgcGC-GCUCCGCUucCG- -5'
24106 3' -59.5 NC_005262.1 + 33872 0.71 0.25681
Target:  5'- aACGACgC-CGCGCGCGAGacgaucguGCGucGGCc -3'
miRNA:   3'- aUGCUG-GaGCGCGCGCUC--------CGCuuCCG- -5'
24106 3' -59.5 NC_005262.1 + 34682 0.66 0.545181
Target:  5'- -uCGGCCuUCGUGCGCGugaugucguucucGGGC--AGGCc -3'
miRNA:   3'- auGCUGG-AGCGCGCGC-------------UCCGcuUCCG- -5'
24106 3' -59.5 NC_005262.1 + 34844 0.68 0.42745
Target:  5'- gACuuCCUCGCGCGCGAGcacaUGAcccucaucucgugGGGCg -3'
miRNA:   3'- aUGcuGGAGCGCGCGCUCc---GCU-------------UCCG- -5'
24106 3' -59.5 NC_005262.1 + 34986 0.7 0.326895
Target:  5'- cGCGAgCUCGagauGCGCG-GGCGcGAGGUc -3'
miRNA:   3'- aUGCUgGAGCg---CGCGCuCCGC-UUCCG- -5'
24106 3' -59.5 NC_005262.1 + 35229 0.72 0.250521
Target:  5'- cAUG-CCgUCGCGCGCGcGGCGGaagccccagauAGGCg -3'
miRNA:   3'- aUGCuGG-AGCGCGCGCuCCGCU-----------UCCG- -5'
24106 3' -59.5 NC_005262.1 + 35636 0.67 0.495491
Target:  5'- aACGGCa-CGCG-GCG-GGCGAuGGGCu -3'
miRNA:   3'- aUGCUGgaGCGCgCGCuCCGCU-UCCG- -5'
24106 3' -59.5 NC_005262.1 + 36104 0.68 0.410194
Target:  5'- -uUGACCUgaucuucgaCGCuGCGCGAuacGGCG-AGGCg -3'
miRNA:   3'- auGCUGGA---------GCG-CGCGCU---CCGCuUCCG- -5'
24106 3' -59.5 NC_005262.1 + 36465 0.71 0.27645
Target:  5'- gGCG-CaugggCGCGCGCGAGGCu--GGCg -3'
miRNA:   3'- aUGCuGga---GCGCGCGCUCCGcuuCCG- -5'
24106 3' -59.5 NC_005262.1 + 36742 0.69 0.366922
Target:  5'- cACGAacgCguaGCGCGUGAGGuCGAuGGCg -3'
miRNA:   3'- aUGCUg--Gag-CGCGCGCUCC-GCUuCCG- -5'
24106 3' -59.5 NC_005262.1 + 37739 0.67 0.482647
Target:  5'- gACGGCuugaugcgccccugCUUGCGCGcCGcGGCGAgcugcuGGGCg -3'
miRNA:   3'- aUGCUG--------------GAGCGCGC-GCuCCGCU------UCCG- -5'
24106 3' -59.5 NC_005262.1 + 38338 0.66 0.545181
Target:  5'- aGCGgcaucGCCUCGCGCaGCGccucGGGCaGGuugucguAGGCg -3'
miRNA:   3'- aUGC-----UGGAGCGCG-CGC----UCCG-CU-------UCCG- -5'
24106 3' -59.5 NC_005262.1 + 38559 0.75 0.138171
Target:  5'- -cCGGCgUUGCGCGCGguucGGGCGGaaGGGCa -3'
miRNA:   3'- auGCUGgAGCGCGCGC----UCCGCU--UCCG- -5'
24106 3' -59.5 NC_005262.1 + 38691 0.68 0.392506
Target:  5'- aACGAuUCUUGCuGUGCugcccGGCGAAGGCa -3'
miRNA:   3'- aUGCU-GGAGCG-CGCGcu---CCGCUUCCG- -5'
24106 3' -59.5 NC_005262.1 + 39633 0.76 0.130969
Target:  5'- gACGcCCUCGCGCGC---GUGAAGGCa -3'
miRNA:   3'- aUGCuGGAGCGCGCGcucCGCUUCCG- -5'
24106 3' -59.5 NC_005262.1 + 40225 0.71 0.290198
Target:  5'- gGCGAUCUccugcgccCGCGCGCGgcGGGCGGuuGGUc -3'
miRNA:   3'- aUGCUGGA--------GCGCGCGC--UCCGCUu-CCG- -5'
24106 3' -59.5 NC_005262.1 + 40474 0.69 0.375321
Target:  5'- cGCGugCUCGUGCGCGGcGCcuugaugcgcuuGAuGGCg -3'
miRNA:   3'- aUGCugGAGCGCGCGCUcCG------------CUuCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.