miRNA display CGI


Results 81 - 100 of 142 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24106 3' -59.5 NC_005262.1 + 40731 0.66 0.546213
Target:  5'- gACGcCCUCGaGCaCG-GGCGgcGGCg -3'
miRNA:   3'- aUGCuGGAGCgCGcGCuCCGCuuCCG- -5'
24106 3' -59.5 NC_005262.1 + 40856 0.69 0.375321
Target:  5'- cACGccucCCUCGCGCG-GAgcauGGCGucGGCg -3'
miRNA:   3'- aUGCu---GGAGCGCGCgCU----CCGCuuCCG- -5'
24106 3' -59.5 NC_005262.1 + 41185 0.7 0.319289
Target:  5'- cGCGAUCgCGUGCGCGcccGGCGAccGCu -3'
miRNA:   3'- aUGCUGGaGCGCGCGCu--CCGCUucCG- -5'
24106 3' -59.5 NC_005262.1 + 43033 0.71 0.263226
Target:  5'- cGCGAUCUCGUgGCGCuGGGGUucGAccGGGCa -3'
miRNA:   3'- aUGCUGGAGCG-CGCG-CUCCG--CU--UCCG- -5'
24106 3' -59.5 NC_005262.1 + 43829 0.69 0.350514
Target:  5'- cACGGCCgcgggccggcCGCGCGCGgcGGuGCGccGGCa -3'
miRNA:   3'- aUGCUGGa---------GCGCGCGC--UC-CGCuuCCG- -5'
24106 3' -59.5 NC_005262.1 + 43866 0.68 0.410194
Target:  5'- cAgGACCUCG-GCGCGAucgcgcgcauGGCcgacaugaagucGAAGGCg -3'
miRNA:   3'- aUgCUGGAGCgCGCGCU----------CCG------------CUUCCG- -5'
24106 3' -59.5 NC_005262.1 + 44146 0.72 0.22097
Target:  5'- -cCGGCCggacgCGCGCGCGAucgGGCaGGAGcGCg -3'
miRNA:   3'- auGCUGGa----GCGCGCGCU---CCG-CUUC-CG- -5'
24106 3' -59.5 NC_005262.1 + 44432 0.66 0.53592
Target:  5'- gGCGACCUCGUGuCGCucGGCaugcugcgaGAGuGGUg -3'
miRNA:   3'- aUGCUGGAGCGC-GCGcuCCG---------CUU-CCG- -5'
24106 3' -59.5 NC_005262.1 + 44937 0.67 0.499474
Target:  5'- cUACGACagccccgaGCGUcaggagcagauggccGcCGAGGCGAGGGCc -3'
miRNA:   3'- -AUGCUGgag-----CGCG---------------C-GCUCCGCUUCCG- -5'
24106 3' -59.5 NC_005262.1 + 45627 0.66 0.556569
Target:  5'- uUGgGGCgCUCGCGCGaucAGGCG--GGCa -3'
miRNA:   3'- -AUgCUG-GAGCGCGCgc-UCCGCuuCCG- -5'
24106 3' -59.5 NC_005262.1 + 45777 0.68 0.437634
Target:  5'- -uCGGCaUCGCG-GCGAagGGCGgcGGCg -3'
miRNA:   3'- auGCUGgAGCGCgCGCU--CCGCuuCCG- -5'
24106 3' -59.5 NC_005262.1 + 45863 0.66 0.556569
Target:  5'- cGCGACCU-GCuCGCcguuGGCGucGGCg -3'
miRNA:   3'- aUGCUGGAgCGcGCGcu--CCGCuuCCG- -5'
24106 3' -59.5 NC_005262.1 + 46167 0.73 0.215428
Target:  5'- cGCGAUCUC-CGaCGCGAcGGCcGAGGCg -3'
miRNA:   3'- aUGCUGGAGcGC-GCGCU-CCGcUUCCG- -5'
24106 3' -59.5 NC_005262.1 + 46254 0.67 0.475798
Target:  5'- cUGCcGCCUCGCGCGCGAccGCGu--GCc -3'
miRNA:   3'- -AUGcUGGAGCGCGCGCUc-CGCuucCG- -5'
24106 3' -59.5 NC_005262.1 + 46627 0.68 0.419222
Target:  5'- cGCGuCCUCGCGCGCGGccuUGccGGCc -3'
miRNA:   3'- aUGCuGGAGCGCGCGCUcc-GCuuCCG- -5'
24106 3' -59.5 NC_005262.1 + 46798 0.69 0.350514
Target:  5'- cACGACgagCGCGCGCucGGCcGgcGGCa -3'
miRNA:   3'- aUGCUGga-GCGCGCGcuCCG-CuuCCG- -5'
24106 3' -59.5 NC_005262.1 + 46901 0.74 0.170742
Target:  5'- aACGuaCUCGCGCaggGCGAuccGGCGAAGGCg -3'
miRNA:   3'- aUGCugGAGCGCG---CGCU---CCGCUUCCG- -5'
24106 3' -59.5 NC_005262.1 + 46920 0.67 0.466098
Target:  5'- gUGCGGCC-CG-GCGCGcGGCc-GGGCg -3'
miRNA:   3'- -AUGCUGGaGCgCGCGCuCCGcuUCCG- -5'
24106 3' -59.5 NC_005262.1 + 46990 0.66 0.505475
Target:  5'- gGCGAaggcaUgGCGCGCGAcgcagaugGGCGAcaucgaGGGCg -3'
miRNA:   3'- aUGCUgg---AgCGCGCGCU--------CCGCU------UCCG- -5'
24106 3' -59.5 NC_005262.1 + 47381 0.68 0.42745
Target:  5'- uUGCG-CCUCGCgGCGCaGAaucccGGCGGccggccgGGGCg -3'
miRNA:   3'- -AUGCuGGAGCG-CGCG-CU-----CCGCU-------UCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.