miRNA display CGI


Results 121 - 140 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24106 3' -59.5 NC_005262.1 + 52529 0.66 0.534894
Target:  5'- -uCGGCCgaggagaUCGCGCugGCGcAGGCGAuggaaacgaucgAGGCc -3'
miRNA:   3'- auGCUGG-------AGCGCG--CGC-UCCGCU------------UCCG- -5'
24106 3' -59.5 NC_005262.1 + 52790 0.68 0.392506
Target:  5'- aGCcGCCUCGCucgucagccGUGCGAGcGCGAccGGCg -3'
miRNA:   3'- aUGcUGGAGCG---------CGCGCUC-CGCUu-CCG- -5'
24106 3' -59.5 NC_005262.1 + 53003 0.67 0.466098
Target:  5'- cGCGGCagCUCGCgcagcaguaccGCGCGcccGGCGcGGGCg -3'
miRNA:   3'- aUGCUG--GAGCG-----------CGCGCu--CCGCuUCCG- -5'
24106 3' -59.5 NC_005262.1 + 54404 0.68 0.401288
Target:  5'- gGCaACgUCGUGCGCaagcucgcgGAGGCGcAGGCc -3'
miRNA:   3'- aUGcUGgAGCGCGCG---------CUCCGCuUCCG- -5'
24106 3' -59.5 NC_005262.1 + 54557 0.69 0.350514
Target:  5'- aGCGACgUCGC-CGCGuucGCGAgcgAGGCg -3'
miRNA:   3'- aUGCUGgAGCGcGCGCuc-CGCU---UCCG- -5'
24106 3' -59.5 NC_005262.1 + 54760 0.68 0.419222
Target:  5'- aACGcACgUCGaCGC-CGAGGCGAccgagaAGGCc -3'
miRNA:   3'- aUGC-UGgAGC-GCGcGCUCCGCU------UCCG- -5'
24106 3' -59.5 NC_005262.1 + 55011 0.74 0.179895
Target:  5'- cAUGuACCUCGCGCacGCGGucGGCGcGGGCa -3'
miRNA:   3'- aUGC-UGGAGCGCG--CGCU--CCGCuUCCG- -5'
24106 3' -59.5 NC_005262.1 + 56598 0.72 0.250521
Target:  5'- gUGCGcAUC-CGCGCGUG-GGCGAcgaaGGGCa -3'
miRNA:   3'- -AUGC-UGGaGCGCGCGCuCCGCU----UCCG- -5'
24106 3' -59.5 NC_005262.1 + 56963 0.66 0.505475
Target:  5'- gGCGAgUUCGCGgGCGuGGUc--GGCa -3'
miRNA:   3'- aUGCUgGAGCGCgCGCuCCGcuuCCG- -5'
24106 3' -59.5 NC_005262.1 + 57495 0.72 0.238327
Target:  5'- gGCGGCCggcgaGCGCaaGAaggcGGCGAAGGCc -3'
miRNA:   3'- aUGCUGGag---CGCGcgCU----CCGCUUCCG- -5'
24106 3' -59.5 NC_005262.1 + 57549 0.66 0.53592
Target:  5'- gGCGGCaaagacCGUGCGCGcGGCGGGcuucagcaucucGGCg -3'
miRNA:   3'- aUGCUGga----GCGCGCGCuCCGCUU------------CCG- -5'
24106 3' -59.5 NC_005262.1 + 57670 0.72 0.226633
Target:  5'- cACGAucgacuUCUCGCGCGCcGGGCGc-GGCa -3'
miRNA:   3'- aUGCU------GGAGCGCGCGcUCCGCuuCCG- -5'
24106 3' -59.5 NC_005262.1 + 59111 0.73 0.194441
Target:  5'- cUACGACUacuacCGCGC-CGAGGCGAAccGGCc -3'
miRNA:   3'- -AUGCUGGa----GCGCGcGCUCCGCUU--CCG- -5'
24106 3' -59.5 NC_005262.1 + 59957 0.72 0.244361
Target:  5'- aGCGGCacgUCaCGCGCGGGGCGcucGGCa -3'
miRNA:   3'- aUGCUGg--AGcGCGCGCUCCGCuu-CCG- -5'
24106 3' -59.5 NC_005262.1 + 60122 0.66 0.515545
Target:  5'- cACGAgggCGCcaGCGuCGcGGCGAAGGCa -3'
miRNA:   3'- aUGCUggaGCG--CGC-GCuCCGCUUCCG- -5'
24106 3' -59.5 NC_005262.1 + 60836 0.71 0.283258
Target:  5'- -cCGGCCUaCGCGaucgGCGuGGCGAuGGCc -3'
miRNA:   3'- auGCUGGA-GCGCg---CGCuCCGCUuCCG- -5'
24106 3' -59.5 NC_005262.1 + 60964 0.66 0.525695
Target:  5'- cACG-CCagCGCGCaaaCGAGGUcGAGGCg -3'
miRNA:   3'- aUGCuGGa-GCGCGc--GCUCCGcUUCCG- -5'
24106 3' -59.5 NC_005262.1 + 61065 0.7 0.326895
Target:  5'- cGgGACCUCGagGCGCaGGGCGAGcGCu -3'
miRNA:   3'- aUgCUGGAGCg-CGCGcUCCGCUUcCG- -5'
24106 3' -59.5 NC_005262.1 + 61401 1.1 0.000418
Target:  5'- cUACGACCUCGCGCGCGAGGCGAAGGCg -3'
miRNA:   3'- -AUGCUGGAGCGCGCGCUCCGCUUCCG- -5'
24106 3' -59.5 NC_005262.1 + 61551 0.67 0.475798
Target:  5'- gGCGAUCUCG-GCGauccgggaCGAGGCGGugacGGUg -3'
miRNA:   3'- aUGCUGGAGCgCGC--------GCUCCGCUu---CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.