miRNA display CGI


Results 21 - 40 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24106 3' -59.5 NC_005262.1 + 52790 0.68 0.392506
Target:  5'- aGCcGCCUCGCucgucagccGUGCGAGcGCGAccGGCg -3'
miRNA:   3'- aUGcUGGAGCG---------CGCGCUC-CGCUu-CCG- -5'
24106 3' -59.5 NC_005262.1 + 52529 0.66 0.534894
Target:  5'- -uCGGCCgaggagaUCGCGCugGCGcAGGCGAuggaaacgaucgAGGCc -3'
miRNA:   3'- auGCUGG-------AGCGCG--CGC-UCCGCU------------UCCG- -5'
24106 3' -59.5 NC_005262.1 + 52450 0.74 0.170742
Target:  5'- gACGugC-CGCGCGCGAGcggcgucuuGCGGAGGa -3'
miRNA:   3'- aUGCugGaGCGCGCGCUC---------CGCUUCCg -5'
24106 3' -59.5 NC_005262.1 + 52387 0.66 0.505475
Target:  5'- gGCGGCCcggCGCgGCGCGGcuucGGCGuGGaGCc -3'
miRNA:   3'- aUGCUGGa--GCG-CGCGCU----CCGCuUC-CG- -5'
24106 3' -59.5 NC_005262.1 + 52326 0.87 0.021981
Target:  5'- cAUGugCUCGCGCGCGAGcGCGGuAGGCa -3'
miRNA:   3'- aUGCugGAGCGCGCGCUC-CGCU-UCCG- -5'
24106 3' -59.5 NC_005262.1 + 51832 0.7 0.334635
Target:  5'- cGCGGCCgaCGUGCGCGAaGuGCuGAAGcGCg -3'
miRNA:   3'- aUGCUGGa-GCGCGCGCU-C-CG-CUUC-CG- -5'
24106 3' -59.5 NC_005262.1 + 51416 0.74 0.170742
Target:  5'- cGCGugCUCgGCgGCGCGc-GCGAGGGCg -3'
miRNA:   3'- aUGCugGAG-CG-CGCGCucCGCUUCCG- -5'
24106 3' -59.5 NC_005262.1 + 51255 0.67 0.456502
Target:  5'- cGCGACCUgcCGC-CGCaacaugGAGGCGAucGCg -3'
miRNA:   3'- aUGCUGGA--GCGcGCG------CUCCGCUucCG- -5'
24106 3' -59.5 NC_005262.1 + 51196 0.69 0.357014
Target:  5'- gGCGGCC-CGCuggagccGCGCG-GGCGAugcugaucgcaccGGGCu -3'
miRNA:   3'- aUGCUGGaGCG-------CGCGCuCCGCU-------------UCCG- -5'
24106 3' -59.5 NC_005262.1 + 51074 0.69 0.358652
Target:  5'- cAgGugCUCGC-CGCGcAGGagGAAGGCa -3'
miRNA:   3'- aUgCugGAGCGcGCGC-UCCg-CUUCCG- -5'
24106 3' -59.5 NC_005262.1 + 50408 0.71 0.283258
Target:  5'- gGCGAUCagCGcCGCG-GAGcGCGAGGGCc -3'
miRNA:   3'- aUGCUGGa-GC-GCGCgCUC-CGCUUCCG- -5'
24106 3' -59.5 NC_005262.1 + 50225 0.66 0.505475
Target:  5'- cACGACCgaaCGC-CGCaAGGUGucGGCc -3'
miRNA:   3'- aUGCUGGa--GCGcGCGcUCCGCuuCCG- -5'
24106 3' -59.5 NC_005262.1 + 49830 0.66 0.504473
Target:  5'- cGCGAUggaGCGCGCGAauggcccggugccGGCGgcGGUa -3'
miRNA:   3'- aUGCUGgagCGCGCGCU-------------CCGCuuCCG- -5'
24106 3' -59.5 NC_005262.1 + 49758 0.66 0.546213
Target:  5'- gGCGGCgCcCGCGCcCGAGGCuccGGCc -3'
miRNA:   3'- aUGCUG-GaGCGCGcGCUCCGcuuCCG- -5'
24106 3' -59.5 NC_005262.1 + 49687 0.66 0.556569
Target:  5'- gGCGGCg-CGCGCaaccugaaccGCGAcGGCGugccGGGCg -3'
miRNA:   3'- aUGCUGgaGCGCG----------CGCU-CCGCu---UCCG- -5'
24106 3' -59.5 NC_005262.1 + 49640 0.72 0.2499
Target:  5'- -gUGGCCUCGCGaucgGCGgccugcaAGGCGgcGGCa -3'
miRNA:   3'- auGCUGGAGCGCg---CGC-------UCCGCuuCCG- -5'
24106 3' -59.5 NC_005262.1 + 49222 0.7 0.314789
Target:  5'- gGCGGCCUcggcggcgcgcagucCGCGCGCGAGGUcc--GCg -3'
miRNA:   3'- aUGCUGGA---------------GCGCGCGCUCCGcuucCG- -5'
24106 3' -59.5 NC_005262.1 + 48993 0.66 0.525695
Target:  5'- gAUGAUCUCGgaaaCGCGCGAGaUGGacAGGCc -3'
miRNA:   3'- aUGCUGGAGC----GCGCGCUCcGCU--UCCG- -5'
24106 3' -59.5 NC_005262.1 + 48445 0.66 0.543118
Target:  5'- cAUGACCaCGCGCGCGuaugccGcGCGGaucgcgagccgcguGGGCa -3'
miRNA:   3'- aUGCUGGaGCGCGCGCu-----C-CGCU--------------UCCG- -5'
24106 3' -59.5 NC_005262.1 + 48125 0.66 0.556569
Target:  5'- gACGAaguUCUCGaaCGUGCGAucgcggaaGGCGAGGGg -3'
miRNA:   3'- aUGCU---GGAGC--GCGCGCU--------CCGCUUCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.